Evidence map›Paper›PMID 23878396›Full record

ArticleMolecular and cellular biology2013

The yeast Snt2 protein coordinates the transcriptional response to hydrogen peroxide-mediated oxidative stress.

Lindsey A Baker, Beatrix M Ueberheide, Scott Dewell, Brian T Chait, Deyou Zheng, C David Allis

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 52 citations in OpenAlex.

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  7. SntB Affects Growth to Regulate Infecting Potential inJournal of fungi (Basel, Switzerland) · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Lindsey A BakerLaboratory of Chromatin Biology & Epigenetics, The Rockefeller University, New York, New York, USA.
Beatrix M Ueberheide
Scott Dewell
Brian T Chait
Deyou Zheng
C David Allis
Rockefeller University · USAlbert Einstein College of Medicine · US

Funding

INFLUENCE OF HISTONE H1 AND HMGS ON GENE EXPRESSIONR01GM040922 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI ALLIS, CHARLES DAVID · 1989 to 2022
$10.0M
National Resource for Mass Spectrom of Biological MacromoleculesP41GM103314 · NIGMS · ROCKEFELLER UNIVERSITY · PI CHAIT, BRIAN T · 2012 to 2017
$9.9M
Mechanisms of Cell Regulation and TransformationT32CA009673 · NCI · ROCKEFELLER UNIVERSITY · PI KAPOOR, TARUN M. · 1991 to 2018
$7.0M
New Tools for Exploring the Dynamic Interactome (Renewal)U54GM103511 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2012 to 2013
$6.2M
NCI NIH HHS CA09673NCI NIH HHS T32 CA009673NIGMS NIH HHS GM103314NIGMS NIH HHS GM103511NIGMS NIH HHS GM40922NIGMS NIH HHS P41 GM103314NIGMS NIH HHS R01 GM040922NIGMS NIH HHS U54 GM103511
6 · The paper itself

Abstract

Regulation of gene expression is a vital part of the cellular stress response, yet the full set of proteins that orchestrate this regulation remains unknown. Snt2 is a Saccharomyces cerevisiae protein whose function has not been well characterized that was recently shown to associate with Ecm5 and the Rpd3 deacetylase. Here, we confirm that Snt2, Ecm5, and Rpd3 physically associate. We then demonstrate that cells lacking Rpd3 or Snt2 are resistant to hydrogen peroxide (H2O2)-mediated oxidative stress and use chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq) to show that Snt2 and Ecm5 recruit Rpd3 to a small number of promoters and in response to H2O2, colocalize independently of Rpd3 to the promoters of stress response genes. By integrating ChIP-seq and expression analyses, we identify target genes that require Snt2 for proper expression after H2O2. Finally, we show that cells lacking Snt2 are also resistant to nutrient stress imparted by the TOR (target of rapamycin) pathway inhibitor rapamycin and identify a common set of genes targeted by Snt2 and Ecm5 in response to both H2O2 and rapamycin. Our results establish a function for Snt2 in regulating transcription in response to oxidative stress and suggest Snt2 may also function in multiple stress pathways.

Indexed as

Oxidative StressAntifungal AgentsChromatin ImmunoprecipitationDNA-Binding ProteinsDrug Resistance, FungalGene Expression ProfilingGene Expression Regulation, FungalHistone DeacetylasesHydrogen PeroxideImmunoblottingMutationOligonucleotide Array Sequence AnalysisOxidantsPromoter Regions, GeneticProtein BindingReverse Transcriptase Polymerase Chain ReactionAntifungal AgentsDNA-Binding ProteinsEcm5 protein, S cerevisiaeHistone DeacetylasesHydrogen PeroxideOxidantsRPD3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSirolimusSnt2 protein, S cerevisiaeUbiquitin-Protein Ligases

Identifiers

PMID23878396
PMCPMC3811877
OpenAlexW2140191158

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.