Evidence map›Paper›PMID 23878260›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Structural and mechanistic insights into VEGF receptor 3 ligand binding and activation.

Veli-Matti Leppänen, Denis Tvorogov, Kaisa Kisko, Andrea E Prota, Michael Jeltsch, Andrey Anisimov, Sandra Markovic-Mueller, Edward Stuttfeld, Kenneth N Goldie, Kurt Ballmer-Hofer and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 120 citations in OpenAlex.

  1. Genetic Variants ofCancer research · 2019
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  14. Lymphatic transport in anti-tumor immunity and metastasis.The Journal of experimental medicine · 2025
    Review
  15. Article
  16. Regulation of VEGFR3 signaling in lymphatic endothelial cells.Frontiers in cell and developmental biology · 2025
    Review
  17. Article
  18. Analysis of crystallographic phase retrieval using iterative projection algorithms.Acta crystallographica. Section D, Structural biology · 2024
    Article
  19. Review
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Veli-Matti LeppänenTranslational Cancer Biology Program, Institute for Molecular Medicine Finland and Helsinki University Central Hospital, Biomedicum Helsinki, University of Helsinki, 00014 Helsinki, Finland.
Denis Tvorogov
Kaisa Kisko
Andrea E Prota
Michael Jeltsch
Andrey Anisimov
Sandra Markovic-Mueller
Edward Stuttfeld
Kenneth N Goldie
Kurt Ballmer-Hofer
Kari Alitalo
Paul Scherrer Institute · CHUniversity of Helsinki · FIUniversity of Basel · CHInstitute for Molecular Medicine Finland · FIWihuri Research Institute · FI

Funding

European Research Council 268804
6 · The paper itself

Abstract

Vascular endothelial growth factors (VEGFs) and their receptors (VEGFRs) are key drivers of blood and lymph vessel formation in development, but also in several pathological processes. VEGF-C signaling through VEGFR-3 promotes lymphangiogenesis, which is a clinically relevant target for treating lymphatic insufficiency and for blocking tumor angiogenesis and metastasis. The extracellular domain of VEGFRs consists of seven Ig homology domains; domains 1-3 (D1-3) are responsible for ligand binding, and the membrane-proximal domains 4-7 (D4-7) are involved in structural rearrangements essential for receptor dimerization and activation. Here we analyzed the crystal structures of VEGF-C in complex with VEGFR-3 domains D1-2 and of the VEGFR-3 D4-5 homodimer. The structures revealed a conserved ligand-binding interface in D2 and a unique mechanism for VEGFR dimerization and activation, with homotypic interactions in D5. Mutation of the conserved residues mediating the D5 interaction (Thr446 and Lys516) and the D7 interaction (Arg737) compromised VEGF-C induced VEGFR-3 activation. A thermodynamic analysis of VEGFR-3 deletion mutants showed that D3, D4-5, and D6-7 all contribute to ligand binding. A structural model of the VEGF-C/VEGFR-3 D1-7 complex derived from small-angle X-ray scattering data is consistent with the homotypic interactions in D5 and D7. Taken together, our data show that ligand-dependent homotypic interactions in D5 and D7 are essential for VEGFR activation, opening promising possibilities for the design of VEGFR-specific drugs.

Indexed as

Protein MultimerizationProtein Structure, TertiaryAmino Acid SequenceBinding, CompetitiveBinding SitesCrystallography, X-RayElectrophoresis, Polyacrylamide GelHumansLigandsMicroscopy, ElectronModels, MolecularMolecular Sequence DataMultiprotein ComplexesMutationProtein BindingScattering, Small AngleLigandsMultiprotein ComplexesVascular Endothelial Growth Factor CVascular Endothelial Growth Factor Receptor-3receptor tyrosine kinasesignal transduction

Identifiers

PMID23878260
PMCPMC3740881
OpenAlexW2095781590

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.