Evidence map›Paper›PMID 23878250›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Sulfatase-activated fluorophores for rapid discrimination of mycobacterial species and strains.

Kimberly E Beatty, Monique Williams, Brian L Carlson, Benjamin M Swarts, Robin M Warren, Paul D van Helden, Carolyn R Bertozzi

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Two Color Imaging of Different Hypoxia Levels in Cancer Cells.Journal of the American Chemical Society · 2023
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Rapid and specific labeling of single liveScience translational medicine · 2018
    Article
  11. Article
  12. Optical visualization and quantification of enzyme activity using dynamic droplet lenses.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Far-red fluorogenic probes for esterase and lipase detection.Chembiochem : a European journal of chemical biology · 2015
    Article
  18. Article
  19. An expanded set of fluorogenic sulfatase activity probes.Chembiochem : a European journal of chemical biology · 2014
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Kimberly E BeattyDepartment of Chemistry, University of California, Berkeley, CA 94720-1460, USA.
Monique Williams
Brian L Carlson
Benjamin M Swarts
Robin M Warren
Paul D van Helden
Carolyn R Bertozzi
Institute of Molecular and Cell Biology · RUStellenbosch University · ZANational Research Foundation · ZAUniversity of California, Berkeley · US

Funding

Mycobacterial Sulfation PathwaysR01AI051622 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI BERTOZZI, CAROLYN · 2002 to 2015
$6.0M
Chemical MycobateriologyR37AI051622 · NIAID · STANFORD UNIVERSITY · PI BERTOZZI, CAROLYN · 2016 to 2025
$4.7M
Sulfatase Activated Fluorescent Probes for In Vivo Diagnostic Imaging of CancerF32CA136109 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI BEATTY, KIMBERLY ELIZABETH · 2008 to 2010
$143k
Howard Hughes Medical InstituteNCI NIH HHS F32 CA136109NCI NIH HHS F32CA136109NIAID NIH HHS AI51622NIAID NIH HHS R01 AI051622NIAID NIH HHS R37 AI051622
6 · The paper itself

Abstract

Most current diagnostic tests for tuberculosis do not reveal the species or strain of pathogen causing pulmonary infection, which can lead to inappropriate treatment regimens and the spread of disease. Here, we report an assay for mycobacterial strain assignment based on genetically conserved mycobacterial sulfatases. We developed a sulfatase-activated probe, 7-hydroxy-9H-(1,3-dichloro-9,9-dimethylacridin-2-one)-sulfate, that detects enzyme activity in native protein gels, allowing the rapid detection of sulfatases in mycobacterial lysates. This assay revealed that mycobacterial strains have distinct sulfatase fingerprints that can be used to judge both the species and lineage. Our results demonstrate the potential of enzyme-activated probes for rapid pathogen discrimination for infectious diseases.

Indexed as

AcridonesAnimalsBacterial ProteinsCell LineCell Line, TumorChlorocebus aethiopsCHO CellsCOS CellsCricetinaeCricetulusElectrophoresisFluorescent DyesGelsHEK293 CellsHumansJurkat Cells7-hydroxy-9H-(1,3-dichloro-9,9-dimethylacridin-2-one)sulfateAcridonesBacterial ProteinsFluorescent DyesGelsSulfatasesSulfatesSulfuric Acid Esterschemical biologyenzyme assayfluorescencehydrolaseMycobacterium tuberculosis

Identifiers

PMID23878250
PMCPMC3740907
OpenAlexW2150260257

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.