Evidence map›Paper›PMID 23878220›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Homologous 2',5'-phosphodiesterases from disparate RNA viruses antagonize antiviral innate immunity.

Rong Zhang, Babal K Jha, Kristen M Ogden, Beihua Dong, Ling Zhao, Ruth Elliott, John T Patton, Robert H Silverman, Susan R Weiss

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed, 1 pooled it
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 1 synthesis or guideline pooled it, 127 citations in OpenAlex.

  1. Pooled it
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  16. Apprehending the NADViruses · 2022
    Article
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33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Rong ZhangDepartment of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Babal K Jha
Kristen M Ogden
Beihua Dong
Ling Zhao
Ruth Elliott
John T Patton
Robert H Silverman
Susan R Weiss
Cleveland Clinic Lerner College of Medicine · USUniversity of Pennsylvania · USNational Institutes of Health · USShanghai Veterinary Research Institute · CN

Funding

Control of Viral Pathogenesis by Regulation of 2-5A LevelsR01AI104887 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI SILVERMAN, ROBERT H., WEISS, SUSAN R · 2013 to 2023
$7.6M
Mechanism Of Rotavirus Genome Replication And PackagingZIAAI000754 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI PATTON, JOHN · 2009 to 2015
$3.4M
Pathogenesis of murine coronavirus induced hepatitisR56AI095285 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI WEISS, SUSAN R · 2011 to 2011
$400k
Intramural NIH HHSNIAID NIH HHS R01 AI104887NIAID NIH HHS R01-AI104887NIAID NIH HHS R56 AI095285NIAID NIH HHS R56-AI-095285
6 · The paper itself

Abstract

Efficient and productive virus infection often requires viral countermeasures that block innate immunity. The IFN-inducible 2',5'-oligoadenylate (2-5A) synthetases (OASs) and ribonuclease (RNase) L are components of a potent host antiviral pathway. We previously showed that murine coronavirus (MHV) accessory protein ns2, a 2H phosphoesterase superfamily member, is a phosphodiesterase (PDE) that cleaves 2-5A, thereby preventing activation of RNase L. The PDE activity of ns2 is required for MHV replication in macrophages and for hepatitis. Here, we show that group A rotavirus (RVA), an important cause of acute gastroenteritis in children worldwide, encodes a similar PDE. The RVA PDE forms the carboxy-terminal domain of the minor core protein VP3 (VP3-CTD) and shares sequence and predicted structural homology with ns2, including two catalytic HxT/S motifs. Bacterially expressed VP3-CTD exhibited 2',5'-PDE activity, which cleaved 2-5A in vitro. In addition, VP3-CTD expressed transiently in mammalian cells depleted 2-5A levels induced by OAS activation with poly(rI):poly(rC), preventing RNase L activation. In the context of recombinant chimeric MHV expressing inactive ns2, VP3-CTD restored the ability of the virus to replicate efficiently in macrophages or in the livers of infected mice, whereas mutant viruses expressing inactive VP3-CTD (H718A or H798R) were attenuated. In addition, chimeric viruses expressing either active ns2 or VP3-CTD, but not nonfunctional equivalents, were able to protect ribosomal RNA from RNase L-mediated degradation. Thus, VP3-CTD is a 2',5'-PDE able to functionally substitute for ns2 in MHV infection. Remarkably, therefore, two disparate RNA viruses encode proteins with homologous 2',5'-PDEs that antagonize activation of innate immunity.

Indexed as

2',5'-Oligoadenylate SynthetaseAdenine NucleotidesAmino Acid SequenceAnimalsBinding SitesCapsid ProteinsCell LineCells, CulturedEndoribonucleasesHost-Pathogen InteractionsHumansImmunity, InnateImmunoblottingMacrophagesMiceMice, Knockout2-5A-dependent ribonuclease2',5'-oligoadenylate2',5'-Oligoadenylate SynthetaseAdenine NucleotidesCapsid ProteinsEndoribonucleasesOligoribonucleotidesPhosphoric Diester HydrolasesViral Nonstructural ProteinsVP3 protein, Rotavirusinterferon-stiumulated geneNidoviralesReoviridaeRNA capping enzyme

Identifiers

PMID23878220
PMCPMC3740845
OpenAlexW2068824485

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.