Evidence map›Paper›PMID 23878195›Full record

ArticleThe Journal of biological chemistry2013

Interaction of transportin-SR2 with Ras-related nuclear protein (Ran) GTPase.

Oliver Taltynov, Jonas Demeulemeester, Frauke Christ, Stéphanie De Houwer, Vicky G Tsirkone, Melanie Gerard, Stephen D Weeks, Sergei V Strelkov, Zeger Debyser

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Changes in Proteome of Fibroblasts Isolated from Psoriatic Skin Lesions.International journal of molecular sciences · 2020
    Article
  8. Article
  9. N-terminal half of transportin SR2 interacts with HIV integrase.The Journal of biological chemistry · 2017
    Article
  10. Article
  11. Structure of transportin SR2, a karyopherin involved in human disease, in complex with Ran.Acta crystallographica. Section F, Structural biology communications · 2014
    Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Oliver TaltynovFrom the Laboratory for Molecular Virology and Gene Therapy and.
Jonas DemeulemeesterFrom the Laboratory for Molecular Virology and Gene Therapy and.
Frauke ChristFrom the Laboratory for Molecular Virology and Gene Therapy and.
Stéphanie De HouwerFrom the Laboratory for Molecular Virology and Gene Therapy and.
Vicky G TsirkoneLaboratory for Biocrystallography, KU Leuven, B-3000 Leuven, Belgium.
Melanie GerardFrom the Laboratory for Molecular Virology and Gene Therapy and.
Stephen D WeeksLaboratory for Biocrystallography, KU Leuven, B-3000 Leuven, Belgium.
Sergei V StrelkovLaboratory for Biocrystallography, KU Leuven, B-3000 Leuven, Belgium.
Zeger DebyserFrom the Laboratory for Molecular Virology and Gene Therapy and. Electronic address: zeger.debyser@med.kuleuven.be.
Gene Therapy Laboratory · FRKU Leuven · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human immunodeficiency virus type 1 (HIV-1) and other lentiviruses are capable of infecting non-dividing cells and, therefore, need to be imported into the nucleus before integration into the host cell chromatin. Transportin-SR2 (TRN-SR2, Transportin-3, TNPO3) is a cellular karyopherin implicated in nuclear import of HIV-1. A model in which TRN-SR2 imports the viral preintegration complex into the nucleus is supported by direct interaction between TRN-SR2 and HIV-1 integrase (IN). Residues in the C-terminal domain of HIV-1 IN that mediate binding to TRN-SR2 were recently delineated. As for most nuclear import cargoes, the driving force behind HIV-1 preintegration complex import is likely a gradient of the GDP- and GTP-bound forms of Ran, a small GTPase. In this study we offer biochemical and structural characterization of the interaction between TRN-SR2 and Ran. By size exclusion chromatography we demonstrate stable complex formation of TRN-SR2 and RanGTP in solution. Consistent with the behavior of normal nuclear import cargoes, HIV-1 IN is released from the complex with TRN-SR2 by RanGTP. Although in concentrated solutions TRN-SR2 by itself was predominantly present as a dimer, the TRN-SR2-RanGTP complex was significantly more compact. Further analysis supported a model wherein one monomer of TRN-SR2 is bound to one monomer of RanGTP. Finally, we present a homology model of the TRN-SR2-RanGTP complex that is in excellent agreement with the experimental small angle x-ray scattering data.

Indexed as

Models, MolecularProtein MultimerizationActive Transport, Cell Nucleusbeta KaryopherinsHIV-1HIV IntegraseHumansMultiprotein ComplexesProtein BindingProtein Structure, Tertiaryran GTP-Binding Proteinbeta KaryopherinsHIV IntegraseMultiprotein Complexesran GTP-Binding ProteinRAN protein, humanTNPO3 protein, humanGTPaseHIV-1Homology ModelingHost-Pathogen InteractionsNuclear TransportProtein-Protein InteractionsX-ray Scattering

Identifiers

PMID23878195
PMCPMC3757221
OpenAlexW2057295602

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.