Evidence map›Paper›PMID 23878096›Full record

ArticleHuman mutation2013

Recurrent HERV-H-mediated 3q13.2-q13.31 deletions cause a syndrome of hypotonia and motor, language, and cognitive delays.

Andrey Shuvarikov, Ian M Campbell, Piotr Dittwald, Nicholas J Neill, Martin G Bialer, Christine Moore, Patricia G Wheeler, Stephanie E Wallace, Mark C Hannibal, Michael F Murray and 18 more

Abstract read
In one paragraph

Article in Human mutation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 49 citations in OpenAlex.

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  11. Molecular functions of human endogenous retroviruses in health and disease.Cellular and molecular life sciences : CMLS · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 14 institutions in 4 countries.

Andrey ShuvarikovSignature Genomic Laboratories, PerkinElmer, Inc, Spokane, Washington.
Ian M Campbell
Piotr Dittwald
Nicholas J Neill
Martin G Bialer
Christine Moore
Patricia G Wheeler
Stephanie E Wallace
Mark C Hannibal
Michael F Murray
Monica A Giovanni
Deborah Terespolsky
Sandi Sodhi
Matteo Cassina
David Viskochil
Billur Moghaddam
Kristin Herman
Chester W Brown
Christine R Beck
Anna Gambin
Sau Wai Cheung
Ankita Patel
Allen N Lamb
Lisa G Shaffer
Jay W Ellison
J Britt Ravnan
Paweł Stankiewicz
Jill A Rosenfeld
Baylor College of Medicine · USPerkinElmer (United States) · USBrigham and Women's Hospital · USCohen Children's Medical Center · USCredit Valley Hospital · CASeattle Children's Hospital · USARUP Laboratories (United States) · USCollege of Europe, Warsaw · PLKaiser Permanente · USNemours Children's Clinic · USPolish Academy of Sciences · PLUniversity of California, Davis · USUniversity of Padua · ITUniversity of Utah · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007330 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI PLON, SHARON E. · 1985 to 2019
$15.6M
Genomic Disorders in Neurodevelopmental DiseaseF31NS083159 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI CAMPBELL, IAN MORGAN · 2013 to 2014
$67k
Howard Hughes Medical InstituteNIGMS NIH HHS 5T32GM007330-34NIGMS NIH HHS T32 GM007330NINDS NIH HHS F31 NS083159
6 · The paper itself

Abstract

We describe the molecular and clinical characterization of nine individuals with recurrent, 3.4-Mb, de novo deletions of 3q13.2-q13.31 detected by chromosomal microarray analysis. All individuals have hypotonia and language and motor delays; they variably express mild to moderate cognitive delays (8/9), abnormal behavior (7/9), and autism spectrum disorders (3/9). Common facial features include downslanting palpebral fissures with epicanthal folds, a slightly bulbous nose, and relative macrocephaly. Twenty-eight genes map to the deleted region, including four strong candidate genes, DRD3, ZBTB20, GAP43, and BOC, with important roles in neural and/or muscular development. Analysis of the breakpoint regions based on array data revealed directly oriented human endogenous retrovirus (HERV-H) elements of ~5 kb in size and of >95% DNA sequence identity flanking the deletion. Subsequent DNA sequencing revealed different deletion breakpoints and suggested nonallelic homologous recombination (NAHR) between HERV-H elements as a mechanism of deletion formation, analogous to HERV-I-flanked and NAHR-mediated AZFa deletions. We propose that similar HERV elements may also mediate other recurrent deletion and duplication events on a genome-wide scale. Observation of rare recurrent chromosomal events such as these deletions helps to further the understanding of mechanisms behind naturally occurring variation in the human genome and its contribution to genetic disease.

Indexed as

Chromosome DeletionAdolescentAdultBase SequenceChildChild, PreschoolChromosome BreakpointsChromosomes, Human, Pair 3Cognition DisordersComparative Genomic HybridizationDevelopmental DisabilitiesEndogenous RetrovirusesFaciesFemaleGene OrderHumans3q13developmental delayHERV-HhypotoniamicroarraymicrodeletionNAHRrecurrent

Identifiers

PMID23878096
PMCPMC4599348
OpenAlexW2092732735

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.