Evidence map›Paper›PMID 23877677›Full record

ArticleAntimicrobial agents and chemotherapy2013

Structures of the class D Carbapenemases OXA-23 and OXA-146: mechanistic basis of activity against carbapenems, extended-spectrum cephalosporins, and aztreonam.

Kip-Chumba J Kaitany, Neil V Klinger, Cynthia M June, Maddison E Ramey, Robert A Bonomo, Rachel A Powers, David A Leonard

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 1 synthesis or guideline pooled it, 91 citations in OpenAlex.

  1. Pooled it
  2. Genetic Characterization of Carbapenem-ResistantAntibiotics (Basel, Switzerland) · 2026
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  15. The Dynamics of OXA-23 β-Lactamase fromInternational journal of molecular sciences · 2023
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Kip-Chumba J KaitanyDepartment of Chemistry, Grand Valley State University, Allendale, Michigan, USA.
Neil V Klinger
Cynthia M June
Maddison E Ramey
Robert A Bonomo
Rachel A Powers
David A Leonard
Grand Valley State University · USUniversity School · US

Funding

Understanding B-Lactam Resistance in Acinetobacter baumanniiR01AI072219 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI ROBERT A. BONOMO, Philip N. Rather · 2007 to 2026
$6.6M
Understanding ceftazidime resistance in SHV B-LactamasesR01AI063517 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI BONOMO, ROBERT A. · 2005 to 2023
$4.9M
Investigations of the role of key active site residues of two class D lactamasesR15AI082416 · NIAID · GRAND VALLEY STATE UNIVERSITY · PI LEONARD, DAVID A · 2009 to 2015
$991k
Structure-based discovery and design of novel class D beta-lactamase inhibitorsR15AI094489 · NIAID · GRAND VALLEY STATE UNIVERSITY · PI POWERS, RACHEL · 2011 to 2014
$709k
NIAID NIH HHS R01 AI063517NIAID NIH HHS R01AI063517NIAID NIH HHS R01 AI072219NIAID NIH HHS R01AI072219NIAID NIH HHS R15 AI082416NIAID NIH HHS R15AI082416-01NIAID NIH HHS R15 AI094489NIAID NIH HHS R15AI094489
6 · The paper itself

Abstract

Class D β-lactamases that hydrolyze carbapenems such as imipenem and doripenem are a recognized danger to the efficacy of these "last-resort" β-lactam antibiotics. Like all known class D carbapenemases, OXA-23 cannot hydrolyze the expanded-spectrum cephalosporin ceftazidime. OXA-146 is an OXA-23 subfamily clinical variant that differs from the parent enzyme by a single alanine (A220) inserted in the loop connecting β-strands β5 and β6. We discovered that this insertion enables OXA-146 to bind and hydrolyze ceftazidime with an efficiency comparable to those of other extended-spectrum class D β-lactamases. OXA-146 also binds and hydrolyzes aztreonam, cefotaxime, ceftriaxone, and ampicillin with higher efficiency than OXA-23 and preserves activity against doripenem. In this study, we report the X-ray crystal structures of both the OXA-23 and OXA-146 enzymes at 1.6-Å and 1.2-Å resolution. A comparison of the two structures shows that the extra alanine moves a methionine (M221) out of its normal position, where it forms a bridge over the top of the active site. This single amino acid insertion also lengthens the β5-β6 loop, moving the entire backbone of this region further away from the active site. A model of ceftazidime bound in the active site reveals that these two structural alterations are both likely to relieve steric clashes between the bulky R1 side chain of ceftazidime and OXA-23. With activity against all four classes of β-lactam antibiotics, OXA-146 represents an alarming new threat to the treatment of infections caused by Acinetobacter spp.

Indexed as

AcinetobacterAmino Acid SequenceAmpicillinAnti-Bacterial AgentsAztreonamBacterial Proteinsbeta-LactamasesCarbapenemsCephalosporinsCrystallography, X-RayDoripenemMicrobial Sensitivity TestsMolecular Sequence DataSequence Homology, Amino AcidAmpicillinAnti-Bacterial AgentsAztreonamBacterial Proteinsbeta-LactamasescarbapenemaseCarbapenemsCephalosporinsDoripenem

Identifiers

PMID23877677
PMCPMC3811470
OpenAlexW2025930267

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.