Evidence map›Paper›PMID 23874236›Full record

ArticlePLoS genetics2013

Genome-wide association mapping in dogs enables identification of the homeobox gene, NKX2-8, as a genetic component of neural tube defects in humans.

Noa Safra, Alexander G Bassuk, Polly J Ferguson, Miriam Aguilar, Rochelle L Coulson, Nicholas Thomas, Peta L Hitchens, Peter J Dickinson, Karen M Vernau, Zena T Wolf and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Article
  3. EFNB3 Frameshift Variant in Weimaraner Dogs with a Condition Resembling a Congenital Mirror Movement Disorder.Movement disorders : official journal of the Movement Disorder Society · 2025
    Article
  4. Anencephaly and palatoschisis in 2 newborn puppies.The Canadian veterinary journal = La revue veterinaire canadienne · 2025
    Article
  5. Article
  6. HomozygousGenes · 2024
    Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Quality of DNA extracted from formalin-fixed, paraffin-embedded canine tissues.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2020
    Article
  14. Article
  15. Article
  16. Article
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  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Noa SafraDepartment of Population Health and Reproduction, School of Veterinary Medicine, University of California Davis, Davis, California, USA. nsafra@ucdavis.edu
Alexander G Bassuk
Polly J Ferguson
Miriam Aguilar
Rochelle L Coulson
Nicholas Thomas
Peta L Hitchens
Peter J Dickinson
Karen M Vernau
Zena T Wolf
Danika L Bannasch
University of California, Davis · USUniversity of Iowa · US

Funding

Naturally occurring dog model for inherited autoinflammatory diseases in childrenR21AI090277 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BANNASCH, DANIKA L · 2010 to 2011
$419k
NIAID NIH HHS 1R21AI090277-01NIAID NIH HHS R21 AI090277
6 · The paper itself

Abstract

Neural tube defects (NTDs) is a general term for central nervous system malformations secondary to a failure of closure or development of the neural tube. The resulting pathologies may involve the brain, spinal cord and/or vertebral column, in addition to associated structures such as soft tissue or skin. The condition is reported among the more common birth defects in humans, leading to significant infant morbidity and mortality. The etiology remains poorly understood but genetic, nutritional, environmental factors, or a combination of these, are known to play a role in the development of NTDs. The variable conditions associated with NTDs occur naturally in dogs, and have been previously reported in the Weimaraner breed. Taking advantage of the strong linkage-disequilibrium within dog breeds we performed genome-wide association analysis and mapped a genomic region for spinal dysraphism, a presumed NTD, using 4 affected and 96 unaffected Weimaraners. The associated region on canine chromosome 8 (pgenome  =3.0 × 10(-5)), after 100,000 permutations, encodes 18 genes, including NKX2-8, a homeobox gene which is expressed in the developing neural tube. Sequencing NKX2-8 in affected Weimaraners revealed a G to AA frameshift mutation within exon 2 of the gene, resulting in a premature stop codon that is predicted to produce a truncated protein. The exons of NKX2-8 were sequenced in human patients with spina bifida and rare variants (rs61755040 and rs10135525) were found to be significantly over-represented (p=0.036). This is the first documentation of a potential role for NKX2-8 in the etiology of NTDs, made possible by investigating the molecular basis of naturally occurring mutations in dogs.

Indexed as

Chromosome MappingGenome-Wide Association StudyAnimalsDogsExonsFolic AcidGenetic Predisposition to DiseaseHomeodomain ProteinsHumansLinkage DisequilibriumMutationNeural Tube DefectsTranscription FactorsFolic AcidHomeodomain ProteinsNKX2-8 protein, humanTranscription Factors

Identifiers

PMID23874236
PMCPMC3715436
OpenAlexW2019997237

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.