Evidence map›Paper›PMID 23873943›Full record

ArticleGenes & development2013

ATR phosphorylates SMARCAL1 to prevent replication fork collapse.

Frank B Couch, Carol E Bansbach, Robert Driscoll, Jessica W Luzwick, Gloria G Glick, Rémy Bétous, Clinton M Carroll, Sung Yun Jung, Jun Qin, Karlene A Cimprich and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 264 papers.

0numbers the graph read from it
0cells of the map it votes in
264citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

264 citing papers in PubMed, 403 citations in OpenAlex.

  1. Science translational medicine · 2023
    Trial
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. A Landscape Analysis of Human SUMOylation.Molecular & cellular proteomics : MCP · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

204 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Frank B CouchDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
Carol E Bansbach
Robert Driscoll
Jessica W Luzwick
Gloria G Glick
Rémy Bétous
Clinton M Carroll
Sung Yun Jung
Jun Qin
Karlene A Cimprich
David Cortez
Vanderbilt University · USBaylor College of Medicine · USStanford University · USCentre for Cancer Biology · AU

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
Structural Biology Facility CoreP30ES000267 · NIEHS · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER · 1985 to 2014
$20.3M
Vanderbilt Clinical Oncology Research Career Development ProgramK12CA090625 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Debra L. Friedman, Paula Jill Hurley · 2001 to 2026
$16.9M
TRAINING PROGRAM IN ENVIRONMENTAL TOXICOLOGYT32ES007028 · NIEHS · VANDERBILT UNIVERSITY · PI F PETER Guengerich, Fiona Edith Harrison · 1985 to 2026
$15.7M
BIOCHEMICAL &CHEMICAL TRAINING FOR CANCER RESEARCHT32CA009582 · NCI · VANDERBILT UNIVERSITY · PI David K Cortez · 1987 to 2026
$8.8M
Regulation of the DNA Damage ResponseR01ES016486 · NIEHS · STANFORD UNIVERSITY · PI CIMPRICH, KARLENE A · 2007 to 2025
$6.2M
Use of Beta-Lapachone for Lung Cancer ChemotherapyR01CA102792 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI BOOTHMAN, DAVID A · 2003 to 2017
$5.3M
Function of the ATR-ATRIP ComplexR01CA102729 · NCI · VANDERBILT UNIVERSITY · PI CORTEZ, DAVID K · 2003 to 2018
$4.2M
Functional Analysis of Replication Stress Response ProteinsR01CA136933 · NCI · VANDERBILT UNIVERSITY · PI CORTEZ, DAVID K · 2009 to 2013
$1.6M
Automated Microscope for Long-Duration, Quantitative Dynamic ImagingS10RR027485 · NCRR · VANDERBILT UNIVERSITY · PI WIKSWO, JOHN PETER · 2010 to 2010
$500k
Checkpoint Regulation of Stalled and Collapsed Replication ForksF31CA171586 · NCI · VANDERBILT UNIVERSITY · PI COUCH, FRANK BENJAMIN · 2012 to 2013
$46k
NCI NIH HHS CA102792NCI NIH HHS CA136933NCI NIH HHS F31 CA171586NCI NIH HHS F31 CA171586-01NCI NIH HHS K12 CA090625NCI NIH HHS P01 CA092584NCI NIH HHS R01 CA102729NCI NIH HHS R01 CA102792NCI NIH HHS R01 CA136933NCI NIH HHS T32 CA009582NCI NIH HHS T32 CA09582NCRR NIH HHS S10 RR027485NIEHS NIH HHS ES016486NIEHS NIH HHS P30 ES000267NIEHS NIH HHS R01 ES016486NIEHS NIH HHS T32 ES007028
6 · The paper itself

Abstract

The DNA damage response kinase ataxia telangiectasia and Rad3-related (ATR) coordinates much of the cellular response to replication stress. The exact mechanisms by which ATR regulates DNA synthesis in conditions of replication stress are largely unknown, but this activity is critical for the viability and proliferation of cancer cells, making ATR a potential therapeutic target. Here we use selective ATR inhibitors to demonstrate that acute inhibition of ATR kinase activity yields rapid cell lethality, disrupts the timing of replication initiation, slows replication elongation, and induces fork collapse. We define the mechanism of this fork collapse, which includes SLX4-dependent cleavage yielding double-strand breaks and CtIP-dependent resection generating excess single-stranded template and nascent DNA strands. Our data suggest that the DNA substrates of these nucleases are generated at least in part by the SMARCAL1 DNA translocase. Properly regulated SMARCAL1 promotes stalled fork repair and restart; however, unregulated SMARCAL1 contributes to fork collapse when ATR is inactivated in both mammalian and Xenopus systems. ATR phosphorylates SMARCAL1 on S652, thereby limiting its fork regression activities and preventing aberrant fork processing. Thus, phosphorylation of SMARCAL1 is one mechanism by which ATR prevents fork collapse, promotes the completion of DNA replication, and maintains genome integrity.

Indexed as

AnimalsAtaxia Telangiectasia Mutated ProteinsCell Cycle ProteinsCell Line, TumorCell SurvivalDNA DamageDNA HelicasesDNA ReplicationDNA, Single-StrandedEnzyme ActivationHumansPhosphorylationProtein BindingProtein Kinase InhibitorsProtein Serine-Threonine KinasesXenopusAtaxia Telangiectasia Mutated ProteinsATR protein, humanCell Cycle ProteinsDNA HelicasesDNA, Single-StrandedProtein Kinase InhibitorsProtein Serine-Threonine KinasesSMARCAL1 protein, humanATRcell cycle checkpointDNA damage responseDNA replicationHARPSMARCAL1

Identifiers

PMID23873943
PMCPMC3731549
OpenAlexW2106892764

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.