ArticleChromosoma2013
Homoeologous relationship of rye chromosome arms as detected with wheat PLUG markers.
Article in Chromosoma, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed, 40 citations in OpenAlex.
- Genome-wide simple sequence repeat analysis and specific molecular marker development of rye.BMC genomics · 2024Article
- In search of the relationship between the rye polyamine oxidase (PAO) gene and resistance to powdery mildew (PM).Journal of applied genetics · 2023Article
- Isolation and Sequencing of Chromosome Arm 7RS of Rye,International journal of molecular sciences · 2022Article
- The Physical Location of Stripe Rust Resistance Genes on Chromosome 6 of Rye (Frontiers in plant science · 2022Article
- Molecular and cytogenetic dissection of stripe rust resistance geneFrontiers in plant science · 2022Article
- Molecular Cytogenetic Identification of a New Wheat-Rye 6R Addition Line and Physical Localization of Its Powdery Mildew Resistance Gene.Frontiers in plant science · 2022Article
- Identification and characterization of a new stripe rust resistance gene Yr83 on rye chromosome 6R in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Molecular dissection of Secale africanum chromosome 6RBMC plant biology · 2020Article
- Scale development and utilization of universal PCR-based and high-throughput KASP markers specific for chromosome arms of rye (Secale cereale L.).BMC genomics · 2020Article
- Rapid identification of homozygosity and site of wild relative introgressions in wheat through chromosome-specific KASP genotyping assays.Plant biotechnology journal · 2020Article
- Development of intron targeting (IT) markers specific for chromosome arm 4VS of Haynaldia villosa by chromosome sorting and next-generation sequencing.BMC genomics · 2017Article
- Physical Location of New PCR-Based Markers and Powdery Mildew Resistance Gene(s) on Rye (Frontiers in plant science · 2017Article
- A new 2DS·2RL Robertsonian translocation transfers stem rust resistance gene Sr59 into wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
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- Genetic mapping of the ScHd1 gene in rye and an assessment of its relationship with earliness per se and plant morphology.Journal of applied genetics · 2014Article
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Corrections and comments
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Authors and funding
6 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Based on the similarity in gene structure between rice and wheat, the polymerase chain reaction (PCR)-based landmark unique gene (PLUG) system enabled us to design primer sets that amplify wheat genic sequences including introns. From the previously reported wheat PLUG markers, we chose 144 markers that are distributed on different chromosomes and in known chromosomal regions (bins) to obtain rye-specific PCR-based markers. We conducted PCR with the 144 primer sets and the template of the Imperial rye genomic DNA and found that 131 (91.0%) primer sets successfully amplified PCR products. Of the 131 PLUG markers, 110 (76.4%) markers showed rye-specific PCR amplification with or without restriction enzyme digestion. We assigned 79 of the 110 markers to seven rye chromosomes (1R to 7R) using seven wheat-rye (cv. Imperial) chromosome addition and substitution lines: 12 to 1R, 8 to 2R, 11 to 3R, 8 to 4R, 16 to 5R, 12 to 6R, and 12 to 7R. Furthermore, we located their positions on the short or long (L) chromosome arm, using 13 Imperial rye telosomic lines of common wheat (except for 3RL). Referring to the chromosome bin locations of the 79 PLUG markers in wheat, we deduced the syntenic relationships between rye and wheat chromosomes. We also discussed chromosomal rearrangements in the rye genome with reference to the cytologically visible chromosomal gaps.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.