Evidence map›Paper›PMID 23873077›Full record

ArticleJournal of bioenergetics and biomembranes2013

Crystal structure of shrimp arginine kinase in binary complex with arginine-a molecular view of the phosphagen precursor binding to the enzyme.

Alonso A López-Zavala, Karina D García-Orozco, Jesús S Carrasco-Miranda, Rocio Sugich-Miranda, Enrique F Velázquez-Contreras, Michael F Criscitiello, Luis G Brieba, Enrique Rudiño-Piñera, Rogerio R Sotelo-Mundo

Abstract read
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In one paragraph

Article in Journal of bioenergetics and biomembranes, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Crystal Structure of H227A Mutant of Arginine Kinase inMolecules (Basel, Switzerland) · 2022
    Article
  5. A Novel GlutathioneToxins · 2021
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Alonso A López-ZavalaCentro de Investigación en Alimentación y Desarrollo, A.C. (CIAD). Carretera a Ejido La Victoria Km 0.6, Apartado Postal 1735, Hermosillo, Sonora, 83304, Mexico.
Karina D García-Orozco
Jesús S Carrasco-Miranda
Rocio Sugich-Miranda
Enrique F Velázquez-Contreras
Michael F Criscitiello
Luis G Brieba
Enrique Rudiño-Piñera
Rogerio R Sotelo-Mundo
Centro de Investigación en Alimentación y Desarrollo · MXUniversidad de Sonora · MXTexas A&M University · USUniversidad Nacional Autónoma de México · MX

Funding

NIGMS NIH HHS GM-0080
6 · The paper itself

Abstract

Arginine kinase (AK) is a key enzyme for energetic balance in invertebrates. Although AK is a well-studied system that provides fast energy to invertebrates using the phosphagen phospho-arginine, the structural details on the AK-arginine binary complex interaction remain unclear. Herein, we determined two crystal structures of the Pacific whiteleg shrimp (Litopenaeus vannamei) arginine kinase, one in binary complex with arginine (LvAK-Arg) and a ternary transition state analog complex (TSAC). We found that the arginine guanidinium group makes ionic contacts with Glu225, Cys271 and a network of ordered water molecules. On the zwitterionic side of the amino acid, the backbone amide nitrogens of Gly64 and Val65 coordinate the arginine carboxylate. Glu314, one of proposed acid-base catalytic residues, did not interact with arginine in the binary complex. This residue is located in the flexible loop 310-320 that covers the active site and only stabilizes in the LvAK-TSAC. This is the first binary complex crystal structure of a guanidine kinase in complex with the guanidine substrate and could give insights into the nature of the early steps of phosphagen biosynthesis.

Indexed as

AnimalsArginineArginine KinaseCrystallography, X-RayModels, MolecularPenaeidaeProtein ConformationSubstrate SpecificityArginineArginine Kinase

Identifiers

PMID23873077
OpenAlexW2135030831

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.