Evidence map›Paper›PMID 23872847›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Targeting H3K4 trimethylation in Huntington disease.

Malini Vashishtha, Christopher W Ng, Ferah Yildirim, Theresa A Gipson, Ian H Kratter, Laszlo Bodai, Wan Song, Alice Lau, Adam Labadorf, Annie Vogel-Ciernia and 10 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
95citing papers in PubMed, 2 pooled it
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

95 citing papers in PubMed, 2 syntheses or guidelines pooled it, 174 citations in OpenAlex.

  1. Pooled it
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35 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 2 countries.

Malini VashishthaDepartment of Psychiatry and Human Behavior and UCI Institute of Memory Impairments and Neurological Disorders, University of California, Irvine, CA 92697, USA.
Christopher W Ng
Ferah Yildirim
Theresa A Gipson
Ian H Kratter
Laszlo Bodai
Wan Song
Alice Lau
Adam Labadorf
Annie Vogel-Ciernia
Juan Troncosco
Christopher A Ross
Gillian P Bates
Dimitri Krainc
Ghazaleh Sadri-Vakili
Steven Finkbeiner
J Lawrence Marsh
David E Housman
Ernest Fraenkel
Leslie M Thompson
Developmental Studies Center · USMassachusetts Institute of Technology · USHarvard University Press · USJohns Hopkins University · USUniversity of California, Irvine · USGladstone Institutes · USKing's College London · GBUniversity of California, San Francisco · US

Funding

VIRUS PRODUCTION COREP30CA014051 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Jacqueline A. Lees · 1985 to 2026
$93.9M
Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Joel E Milam · 1994 to 2026
$57.9M
Center for Protein Folding Machinery (RMI)PN2EY016525 · NEI · BAYLOR COLLEGE OF MEDICINE · PI CHIU, WAH · 2005 to 2015
$33.6M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007618 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANDERSON, MARK S · 1985 to 2020
$29.6M
Tumor Cell Networks CenterU54CA112967 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LAUFFENBURGER, DOUGLAS A · 2004 to 2015
$26.2M
TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI NILES, JACQUIN C · 1985 to 2020
$25.6M
TEXAS REPOSITORY FOR AIDS NEUROPATHOGENESIS RESEARCHR24NS045491 · NINDS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI GELMAN, BENJAMIN B. · 2002 to 2007
$8.1M
MECHANISMS OF HUNTINGTIN-INDUCED NEURODEGENERATIONR01NS039074 · NINDS · J. DAVID GLADSTONE INSTITUTES · PI FINKBEINER, STEVEN M · 2000 to 2017
$5.4M
Novel Histone Deacetylase Inhibitors as Therapeutics for Huntington's DiseaseU01NS063953 · NINDS · SCRIPPS RESEARCH INSTITUTE, THE · PI GOTTESFELD, JOEL M. · 2010 to 2013
$5.1M
Role of protein acetylation in Huntington's diseaseR01NS045283 · NINDS · UNIVERSITY OF CALIFORNIA-IRVINE · PI MARSH, J LAWRENCE · 2003 to 2014
$3.6M
A Systems Biology Approach to Reveal Huntington's Disease MechanismsR01GM089903 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI FRAENKEL, ERNEST · 2010 to 2014
$2.4M
Pathogenic Impact of SUMO modification in Huntington's diseaseR01NS052789 · NINDS · UNIVERSITY OF CALIFORNIA-IRVINE · PI THOMPSON, LESLIE MICHELS · 2006 to 2010
$1.9M
NCI NIH HHS CA-62203NCI NIH HHS P30 CA014051NCI NIH HHS P30 CA062203NCI NIH HHS P30-CA14051NCI NIH HHS U54 CA112967NEI NIH HHS PN2 EY016525NEI NIH HHS PN2EY016525NIEHS NIH HHS P30 ES002109NIEHS NIH HHS P30-ES002109NIGMS NIH HHS R01 GM089903NIGMS NIH HHS T32 GM007618NINDS NIH HHS 1F31 NS077543NINDS NIH HHS 2R01 NS45491NINDS NIH HHS F31 NS077543NINDS NIH HHS NS072793NINDS NIH HHS NS-45283NINDS NIH HHS NS-52789NINDS NIH HHS R01 NS039074NINDS NIH HHS R01 NS045283NINDS NIH HHS R01 NS052789NINDS NIH HHS R01 NS083390NINDS NIH HHS R21 NS072793NINDS NIH HHS R24 NS045491NINDS NIH HHS U01 NS063953
6 · The paper itself

Abstract

Transcriptional dysregulation is an early feature of Huntington disease (HD). We observed gene-specific changes in histone H3 lysine 4 trimethylation (H3K4me3) at transcriptionally repressed promoters in R6/2 mouse and human HD brain. Genome-wide analysis showed a chromatin signature for this mark. Reducing the levels of the H3K4 demethylase SMCX/Jarid1c in primary neurons reversed down-regulation of key neuronal genes caused by mutant Huntingtin expression. Finally, reduction of SMCX/Jarid1c in primary neurons from BACHD mice or the single Jarid1 in a Drosophila HD model was protective. Therefore, targeting this epigenetic signature may be an effective strategy to ameliorate the consequences of HD.

Indexed as

AnimalsAnimals, Genetically ModifiedBlotting, WesternBrainBrain-Derived Neurotrophic FactorCells, CulturedDrosophila melanogasterFemaleGene Expression ProfilingHistone DemethylasesHistonesHumansHuntingtin ProteinHuntington DiseaseLysineMaleBrain-Derived Neurotrophic FactorHistone DemethylasesHistonesHTT protein, humanHuntingtin ProteinKdm5c protein, mouseLysineNerve Tissue ProteinsOxidoreductases, N-Demethylatingneurodegenerationpolyglutamine

Identifiers

PMID23872847
PMCPMC3740882
OpenAlexW2125309982

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.