Evidence map›Paper›PMID 23872564›Full record

ArticleApplied and environmental microbiology2013

The carbohydrate metabolism signature of lactococcus lactis strain A12 reveals its sourdough ecosystem origin.

Delphine Passerini, Michèle Coddeville, Pascal Le Bourgeois, Pascal Loubière, Paul Ritzenthaler, Catherine Fontagné-Faucher, Marie-Line Daveran-Mingot, Muriel Cocaign-Bousquet

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Applied and environmental microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
5.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Genomic Insights into ProbioticMicroorganisms · 2025
    Article
  5. Review
  6. Article
  7. Article
  8. Lactococcus lactis, a bacterium with probiotic functions and pathogenicity.World journal of microbiology & biotechnology · 2023
    Review
  9. Inhibition Mechanism ofFoods (Basel, Switzerland) · 2023
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Microbial high throughput phenomics: The potential of an irreplaceable omics.Computational and structural biotechnology journal · 2020
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Delphine PasseriniUniversité de ToulouseUniversité Paul Sabatier, Toulouse, France.
Michèle Coddeville
Pascal Le Bourgeois
Pascal Loubière
Paul Ritzenthaler
Catherine Fontagné-Faucher
Marie-Line Daveran-Mingot
Muriel Cocaign-Bousquet
Université Fédérale de Toulouse Midi-Pyrénées · FRUniversité Toulouse III - Paul Sabatier · FRLaboratoire d'Ingénierie des Systèmes Biologiques et des Procédés · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lactococcus lactis subsp. lactis strain A12 was isolated from sourdough. Combined genomic, transcriptomic, and phenotypic analyses were performed to understand its survival capacity in the complex sourdough ecosystem and its role in the microbial community. The genome sequence comparison of strain A12 with strain IL1403 (a derivative of an industrial dairy strain) revealed 78 strain-specific regions representing 23% of the total genome size. Most of the strain-specific genes were involved in carbohydrate metabolism and are potentially required for its persistence in sourdough. Phenotype microarray, growth tests, and analysis of glycoside hydrolase content showed that strain A12 fermented plant-derived carbohydrates, such as arabinose and α-galactosides. Strain A12 exhibited specific growth rates on raffinose that were as high as they were on glucose and was able to release sucrose and galactose outside the cell, providing soluble carbohydrates for sourdough microflora. Transcriptomic analysis identified genes specifically induced during growth on raffinose and arabinose and reveals an alternative pathway for raffinose assimilation to that used by other lactococci.

Indexed as

Food MicrobiologyBacterial Typing TechniquesCarbohydrate MetabolismDNA, BacterialFermentationGenome, BacterialGlycoside HydrolasesLactococcus lactisMolecular Sequence DataSequence Analysis, DNATranscriptomeDNA, BacterialGlycoside Hydrolases

Identifiers

PMID23872564
PMCPMC3811347
OpenAlexW2100884910

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.