Evidence map›Paper›PMID 23872534›Full record

ArticleGene2013

Characterization of the human mitochondrial thiamine pyrophosphate transporter SLC25A19 minimal promoter: a role for NF-Y in regulating basal transcription.

Svetlana M Nabokina, Judith E Valle, Hamid M Said

Abstract read
In one paragraph

Article in Gene, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. miR-122-5p is involved in posttranscriptional regulation of the mitochondrial thiamin pyrophosphate transporter (American journal of physiology. Gastrointestinal and liver physiology · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Svetlana M NabokinaDepartment of Medicine, University of California, Irvine, CA 92697, USA.
Judith E Valle
Hamid M Said
University of California, Irvine · USLong Beach Medical Center · US

Funding

Physiology/Pathophysiology of Vitamin B1 Transport in Pancreatic Acinar CellsR01AA018071 · NIAAA · UNIVERSITY OF CALIFORNIA-IRVINE · PI SAID, HAMID M · 2009 to 2023
$6.3M
Vitamin B1 (thiamin) transport in Alzheimer’s Disease: Role of microRNAs in regulating level of expression of its transporters (SLC19A2 & SLC19A3) in human brain cells and effect of hypoxiaR01DK056061 · NIDDK · UNIVERSITY OF CALIFORNIA-IRVINE · PI SAID, HAMID M · 1999 to 2024
$5.0M
Mechanism/Regulation of Intestinal Thiamin UptakeR37DK056061 · NIDDK · UNIVERSITY OF CALIFORNIA-IRVINE · PI SAID, HAMID M · 2009 to 2018
$3.6M
NIAAA NIH HHS AA-18071NIAAA NIH HHS R01 AA018071NIDDK NIH HHS DK-56061NIDDK NIH HHS R01 DK056061NIDDK NIH HHS R37 DK056061
6 · The paper itself

Abstract

Transcriptional regulation of expression of the human mitochondrial thiamine pyrophosphate transporter (the product of the SLC25A19 gene) is unknown. To understand this regulation, we cloned and characterized the 5'-regulatory region of the SLC25A19 gene (1,080 bp). The cloned fragment was found to possess promoter activity in transiently transfected human-derived liver HepG2 cells. 5'- and 3'-deletion analysis has identified the minimal region required for basal SLC25A19 promoter activity to be between -131 and +20 (using the distal transcriptional start site as +1). The minimal promoter lacks typical TATA motif and contains two inverted CCAAT boxes (binding sites for NF-Y transcriptional factor). By means of mutational analysis, the critical role of both the upstream and downstream CCAAT boxes in basal SLC25A19 promoter activity was established; however, each of these boxes alone was found to be unable to support promoter activity. EMSA and supershift EMSA (with the use of specific antibodies against NF-Y subunits) studies, as well as chromatin immunoprecipitation assay, demonstrated the binding of NF-Y to both CCAAT boxes in vitro and in vivo, respectively. The requirement for NF-Y in SLC25A19 promoter activity in vivo was directly confirmed by the use of a dominant negative NF-YA mutant in transiently transfected HepG2 cells. These studies report for the first time the characterization of the SLC25A19 promoter and demonstrate an essential role for NF-Y in its basal activity.

Indexed as

Gene Expression RegulationPromoter Regions, GeneticBase SequenceBinding, CompetitiveCCAAT-Binding FactorChromosome MappingCloning, MolecularElectrophoretic Mobility Shift AssayGenes, ReporterHep G2 CellsHumansLuciferases, RenillaMembrane Transport ProteinsMitochondrial Membrane Transport ProteinsMolecular Sequence DataProtein BindingCCAAT-Binding FactorLuciferases, RenillaMembrane Transport ProteinsMitochondrial Membrane Transport ProteinsSLC25A19 protein, human2-Amino-2-hydroxymethyl-propane-1,3-diolAAdenosineBase pair(s)BpCcDNAChipChromatin immunoprecipitationCytidineDMEMDNA complementary to RNADulbecco's Modified Eagle MediumEDTAElectromobility shift assayEMSAEthylenediaminetetraacetic acidGGuanosineIgGImmunoglobulin GKbKilobaseMCFMitochondriaMitochondrial carrier familyMitochondrial thiamine pyrophosphate transporterMTPPTNF-YntNuclear factor YNucleotide(s)PCRPolymerase chain reactionPromoterRACERapid amplification of the cDNA endsReverse transcriptase polymerase chain reactionRT-PCRSDSSESLC25A19Sodium dodecyl sulfateSolute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19Standard error of meanTThiamine pyrophosphateThiamine transporter-1Thiamine transporter-2THTR-1THTR-2ThymidineTPPTranscription regulationTris

Identifiers

PMID23872534
PMCPMC3764993
OpenAlexW2070127502

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.