Evidence map›Paper›PMID 23872390›Full record

ArticleNeuroscience2013

Minimal NF-κB activity in neurons.

Samuel J Listwak, Priyanka Rathore, Miles Herkenham

Abstract read
In one paragraph

Article in Neuroscience, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 1 synthesis or guideline pooled it, 94 citations in OpenAlex.

  1. Pooled it
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  17. Study on the Correlation Between NF-κB and Central Fatigue.Journal of molecular neuroscience : MN · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Samuel J Listwak *Section on Functional Neuroanatomy, National Institute of Mental Health, NIH, Bethesda, MD 20892, USA.
Priyanka Rathore *Section on Functional Neuroanatomy, National Institute of Mental Health, NIH, Bethesda, MD 20892, USA.
Miles HerkenhamSection on Functional Neuroanatomy, National Institute of Mental Health, NIH, Bethesda, MD 20892, USA.
National Institute of Mental Health · US

Funding

Studies Of Central Nervous System Functional AnatomyZIAMH001090 · NIMH · NATIONAL INSTITUTE OF MENTAL HEALTH · PI HERKENHAM, MILES A. · 2009 to 2022
$19.3M
Intramural NIH HHS ZIA MH001090
6 · The paper itself

Abstract

Nuclear factor-kappa B (NF-κB) is a ubiquitous transcription factor that regulates immune and cell-survival signaling pathways. NF-κB has been reported to be present in neurons wherein it reportedly responds to immune and toxic stimuli, glutamate, and synaptic activity. However, because the brain contains many cell types, assays specifically measuring neuronal NF-κB activity are difficult to perform and interpret. To address this, we compared NF-κB activity in cultures of primary neocortical neurons, mixed brain cells, and liver cells, employing Western blot of NF-κB subunits, electrophoretic mobility shift assay (EMSA) of nuclear κB DNA binding, reporter assay of κB DNA binding, immunofluorescence of the NF-κB subunit protein p65, quantitative real-time polymerase chain reaction (PCR) of NF-κB-regulated gene expression, and enzyme-linked immunosorbent assay (ELISA) of produced proteins. Assay of p65 showed its constitutive presence in cytoplasm and nucleus of neurons at levels significantly lower than in mixed brain or liver cells. EMSA and reporter assays showed that constitutive NF-κB activity was nearly absent in neurons. Induced activity was minimal--many fold lower than in other cell types, as measured by phosphorylation and degradation of the inhibitor IκBα, nuclear accumulation of p65, binding to κB DNA consensus sites, NF-κB reporting, or induction of NF-κB-responsive genes. The most efficacious activating stimuli for neurons were the pro-inflammatory cytokines tumor necrosis factor α (TNFα) and interleukin-beta (IL-β). Neuronal NF-κB was not responsive to glutamate in most assays, and it was also unresponsive to hydrogen peroxide, lipopolysaccharide, norepinephrine, ATP, phorbol ester, and nerve growth factor. The chemokine gene transcripts CCL2, CXCL1, and CXCL10 were strongly induced via NF-κB activation by TNFα in neurons, but many candidate responsive genes were not, including the neuroprotective genes SOD2 and Bcl-xL. Importantly, the level of induced neuronal NF-κB activity in response to TNFα or any other stimulus was lower than the level of constitutive activity in non-neuronal cells, calling into question the functional significance of neuronal NF-κB activity.

Indexed as

AnimalsBlotting, WesternCell NucleusCerebral CortexChemokinesCytosolDNADNA PrimersElectrophoretic Mobility Shift AssayEnzyme-Linked Immunosorbent AssayFemaleFluorescent Antibody TechniqueGlutamic AcidImmunohistochemistryInterleukin-1betaLiverChemokinesDNADNA PrimersGlutamic AcidInterleukin-1betaNF-kappa BTumor Necrosis Factor-alpha2-amino-5-phosphonopentanoate2-[(aminocarbonyl)amino]-5-(4-fluorophenyl)-3-thiophenecarboxamide6-cyano-7-nitroquinoxaline-2,3-dioneammonium pyrrolidinedithiocarbamateAP5BDNFbrain-derived neurotrophic factorBRNCNQXcortical neuronsCxNDMEMDulbecco’s modified Eagle’s mediumEDTAEGTAelectrophoretic mobility shift assayELISAEMSAenzyme-linked immunosorbent assayERKethylenediaminetetraacetic acidethylene glycol tetraacetic acidextracellular signal-regulated kinaseFBSfetal bovine serumGAPDHglyceraldehyde 3-phosphate dehydrogenaseHanks balanced salt solutionHBSShorseradish peroxidaseHRPIgGIKKILimmunoglobulin Gin situ hybridization histochemistryinterleukinISHHIκB kinaseLCN2lipocalin 2lipopolysaccharideliver cellsLPSLVRmixed brain cellsnerve growth factorneuroprotectionNF-κBNGFNGSNLSnormal goat serumnuclear factor-kappa Bnuclear localization signalPBSPDTCphorbol 12-myristate 13-acetatephosphate-buffered salineplasticityPMAqPCRquantitative real-time polymerase chain reactionSDSsodium dodecyl sulfateTata binding proteinTBPTBSTTLRTNFTNFαtoll-like receptorTPCAtranscription factorTris-Buffered Saline containing 0.05% Tween-20tumor necrosis factor α

Identifiers

PMID23872390
PMCPMC3785079
OpenAlexW1965526514

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.