Evidence map›Paper›PMID 23869605›Full record

ArticleBiochemistry2013

Distinct structural alterations in proliferating cell nuclear antigen block DNA mismatch repair.

Lynne M Dieckman, Elizabeth M Boehm, Manju M Hingorani, M Todd Washington

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Lynne M DieckmanDepartment of Biochemistry, Carver College of Medicine, University of Iowa, Iowa City, IA 52242, USA.
Elizabeth M Boehm
Manju M Hingorani
M Todd Washington

Funding

Mechanisms of Damaged DNA Replication in EukaryotesR01GM081433 · NIGMS · UNIVERSITY OF IOWA · PI WASHINGTON, M. TODD · 2008 to 2021
$4.2M
Predoctoral Training in the Pharmacological SciencesT32GM067795 · NIGMS · UNIVERSITY OF IOWA · PI STRACK, STEFAN · 2004 to 2021
$3.4M
NIGMS NIH HHS GM081433NIGMS NIH HHS R01 GM081433NIGMS NIH HHS T32 GM067795
6 · The paper itself

Abstract

During DNA replication, mismatches and small loops in the DNA resulting from insertions or deletions are repaired by the mismatch repair (MMR) machinery. Proliferating cell nuclear antigen (PCNA) plays an important role in both mismatch-recognition and resynthesis stages of MMR. Previously, two mutant forms of PCNA were identified that cause defects in MMR with little, if any, other defects. The C22Y mutant PCNA protein completely blocks MutSα-dependent MMR, and the C81R mutant PCNA protein partially blocks both MutSα-dependent and MutSβ-dependent MMR. In order to understand the structural and mechanistic basis by which these two amino acid substitutions in PCNA proteins block MMR, we solved the X-ray crystal structures of both mutant proteins and carried out further biochemical studies. We found that these amino acid substitutions lead to subtle, distinct structural changes in PCNA. The C22Y substitution alters the positions of the α-helices lining the central hole of the PCNA ring, whereas the C81R substitution creates a distortion in an extended loop near the PCNA subunit interface. We conclude that the structural integrity of the α-helices lining the central hole and this loop are both necessary to form productive complexes with MutSα and mismatch-containing DNA.

Indexed as

DNA Mismatch RepairProtein Structure, SecondaryCrystallography, X-RayDNA-Binding ProteinsDNA, FungalDNA Polymerase IIIElectrophoresis, Polyacrylamide GelModels, MolecularMolecular StructureMutant ProteinsMutation, MissenseMutS DNA Mismatch-Binding ProteinMutS Homolog 2 ProteinProliferating Cell Nuclear AntigenProtein BindingSaccharomyces cerevisiae ProteinsDNA-Binding ProteinsDNA, FungalDNA Polymerase IIIMSH2 protein, S cerevisiaeMSH6 protein, S cerevisiaeMutant ProteinsMutS DNA Mismatch-Binding ProteinMutS Homolog 2 ProteinPOL30 protein, S cerevisiaeProliferating Cell Nuclear AntigenSaccharomyces cerevisiae Proteins

Identifiers

PMID23869605
PMCPMC3845532

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.