Evidence map›Paper›PMID 23869057›Full record

ArticleJournal of applied physiology (Bethesda, Md. : 1985)2013

Time course of gene expression during mouse skeletal muscle hypertrophy.

Thomas Chaillou, Jonah D Lee, Jonathan H England, Karyn A Esser, John J McCarthy

Open access · greenAbstract read
In one paragraph

Article in Journal of applied physiology (Bethesda, Md. : 1985), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 1 synthesis or guideline pooled it, 96 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Review
  6. Skeletal muscle hypertrophy: cell growth is cell growth.American journal of physiology. Cell physiology · 2024
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Molecular predictors of resistance training outcomes in young untrained female adults.Journal of applied physiology (Bethesda, Md. : 1985) · 2023
    Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. An intron variant of the GLI family zinc finger 3 (GLI3) gene differentiates resistance training-induced muscle fiber hypertrophy in younger men.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2021
    Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Thomas ChaillouCenter for Muscle Biology, University of Kentucky, Lexington, Kentucky;
Jonah D Lee
Jonathan H England
Karyn A Esser
John J McCarthy
University of Kentucky · US

Funding

SKELETAL MUSCLE HYPERTROPHY AND INTRACELLULAR SIGNALINGR01AR045617 · NIAMS · UNIVERSITY OF KENTUCKY · PI ESSER, KARYN A · 1999 to 2011
$2.9M
BetaCatenin Regulation of Skeletal Muscle HypertrophyR01AR061939 · NIAMS · UNIVERSITY OF KENTUCKY · PI ESSER, KARYN A, MCCARTHY, JOHN JOSEPH · 2012 to 2016
$1.7M
NIAMS NIH HHS AR-45617NIAMS NIH HHS R01 AR061939
6 · The paper itself

Abstract

The purpose of this study was to perform a comprehensive transcriptome analysis during skeletal muscle hypertrophy to identify signaling pathways that are operative throughout the hypertrophic response. Global gene expression patterns were determined from microarray results on days 1, 3, 5, 7, 10, and 14 during plantaris muscle hypertrophy induced by synergist ablation in adult mice. Principal component analysis and the number of differentially expressed genes (cutoffs ≥2-fold increase or ≥50% decrease compared with control muscle) revealed three gene expression patterns during overload-induced hypertrophy: early (1 day), intermediate (3, 5, and 7 days), and late (10 and 14 days) patterns. Based on the robust changes in total RNA content and in the number of differentially expressed genes, we focused our attention on the intermediate gene expression pattern. Ingenuity Pathway Analysis revealed a downregulation of genes encoding components of the branched-chain amino acid degradation pathway during hypertrophy. Among these genes, five were predicted by Ingenuity Pathway Analysis or previously shown to be regulated by the transcription factor Kruppel-like factor-15, which was also downregulated during hypertrophy. Moreover, the integrin-linked kinase signaling pathway was activated during hypertrophy, and the downregulation of muscle-specific micro-RNA-1 correlated with the upregulation of five predicted targets associated with the integrin-linked kinase pathway. In conclusion, we identified two novel pathways that may be involved in muscle hypertrophy, as well as two upstream regulators (Kruppel-like factor-15 and micro-RNA-1) that provide targets for future studies investigating the importance of these pathways in muscle hypertrophy.

Indexed as

Amino Acids, Branched-ChainAnimalsDown-RegulationGene ExpressionGene Expression ProfilingHypertrophyMaleMiceMice, Inbred C57BLMicroRNAsMuscle, SkeletalProtein Serine-Threonine KinasesScaffold Protein ILKSignal TransductionTranscription FactorsUp-RegulationAmino Acids, Branched-ChainMicroRNAsProtein Serine-Threonine KinasesScaffold Protein ILKTranscription Factorsbranched-chain amino acidILK signalingKLF15micro-RNA-1transcriptome

Identifiers

PMID23869057
PMCPMC3798821
OpenAlexW2116869680

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.