Evidence map›Paper›PMID 23868908›Full record

ArticleDatabase : the journal of biological databases and curation2013

CREDO: a structural interactomics database for drug discovery.

Adrian M Schreyer, Tom L Blundell

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. COCFrontiers in bioinformatics · 2025
    Article
  3. 2D SIFt: a matrix of ligand-receptor interactions.Journal of cheminformatics · 2021
    Article
  4. Review
  5. Frontiers in pharmacology · 2019
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Phosphopeptide interactions with BRCA1 BRCT domains: More than just a motif.Progress in biophysics and molecular biology · 2015
    Review
  12. CHOPIN: a web resource for the structural and functional proteome of Mycobacterium tuberculosis.Database : the journal of biological databases and curation · 2015
    Article
  13. SInCRe-structural interactome computational resource for Mycobacterium tuberculosis.Database : the journal of biological databases and curation · 2015
    Article
  14. Article
  15. Article
  16. PLIC: protein-ligand interaction clusters.Database : the journal of biological databases and curation · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Adrian M SchreyerDepartment of Biochemistry, University of Cambridge, 80 Tennis Court Road, CB2 1GA Cambridge, UK. ams214@cam.ac.uk
Tom L Blundell

Funding

Wellcome TrustWellcome Trust RG57277
6 · The paper itself

Abstract

CREDO is a unique relational database storing all pairwise atomic interactions of inter- as well as intra-molecular contacts between small molecules and macromolecules found in experimentally determined structures from the Protein Data Bank. These interactions are integrated with further chemical and biological data. The database implements useful data structures and algorithms such as cheminformatics routines to create a comprehensive analysis platform for drug discovery. The database can be accessed through a web-based interface, downloads of data sets and web services at http://www-cryst.bioc.cam.ac.uk/credo. Database URL: http://www-cryst.bioc.cam.ac.uk/credo.

Indexed as

Databases, ProteinDrug DiscoveryAlgorithmsBenzamidesBinding SitesCluster AnalysisHumansImatinib MesylateInternetLigandsModels, MolecularPiperazinesProteinsProtein Structure, SecondaryPyrimidinesQuinone ReductasesBenzamidesImatinib MesylateLigandsNRH - quinone oxidoreductase2PiperazinesProteinsPyrimidinesQuinone Reductases

Identifiers

PMID23868908
PMCPMC3715132

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.