Evidence map›Paper›PMID 23867627›Full record

ArticleEMBO reports2013

Structural insights into substrate recognition in proton-dependent oligopeptide transporters.

Fatma Guettou, Esben M Quistgaard, Lionel Trésaugues, Per Moberg, Caroline Jegerschöld, Lin Zhu, Agnes Jin Oi Jong, Pär Nordlund, Christian Löw

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 102 citations in OpenAlex.

  1. Article
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  6. Cell-based homologous expression system forCurrent research in physiology · 2024
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  7. Review
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  16. Membrane Chemistry Tunes the Structure of a Peptide Transporter.Angewandte Chemie (International ed. in English) · 2020
    Article
  17. Article
  18. Review
  19. Article
  20. Structural basis for oligomerization of the prokaryotic peptide transporter PepTActa crystallographica. Section F, Structural biology communications · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Fatma GuettouDepartment of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-17177 Stockholm, Sweden.
Esben M Quistgaard
Lionel Trésaugues
Per Moberg
Caroline Jegerschöld
Lin Zhu
Agnes Jin Oi Jong
Pär Nordlund
Christian Löw
Karolinska Institutet · SEKTH Royal Institute of Technology · SENanyang Technological University · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Short-chain peptides are transported across membranes through promiscuous proton-dependent oligopeptide transporters (POTs)--a subfamily of the major facilitator superfamily (MFS). The human POTs, PEPT1 and PEPT2, are also involved in the absorption of various drugs in the gut as well as transport to target cells. Here, we present a structure of an oligomeric POT transporter from Shewanella oneidensis (PepTSo2), which was crystallized in the inward open conformation in complex with the peptidomimetic alafosfalin. All ligand-binding residues are highly conserved and the structural insights presented here are therefore likely to also apply to human POTs.

Indexed as

AlanineAmino Acid SequenceBacterial ProteinsMolecular Docking SimulationMolecular Sequence DataProtein BindingShewanellaSymportersalafosfalinAlanineBacterial ProteinsSymporters

Identifiers

PMID23867627
PMCPMC3790050
OpenAlexW2119013150

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.