Evidence map›Paper›PMID 23865912›Full record

ArticleBMC microbiology2013

Conservation of the genes for HC-toxin biosynthesis in Alternaria jesenskae.

Wanessa D Wight, Roman Labuda, Jonathan D Walton

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
6.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
  3. Genomic Based Analysis of the Biocontrol SpeciesJournal of fungi (Basel, Switzerland) · 2023
    Article
  4. Article
  5. Article
  6. Recent Advances inJournal of fungi (Basel, Switzerland) · 2022
    Review
  7. Article
  8. Article
  9. Whole Genome Sequence ofFrontiers in microbiology · 2021
    Article
  10. Time-Course RNAseq RevealsFrontiers in microbiology · 2020
    Article
  11. Article
  12. Article
  13. Toxicology reports · 2019
    Review
  14. Frontiers in microbiology · 2017
    Review
  15. Article
  16. Review
  17. Article
  18. Secondary metabolites in fungus-plant interactions.Frontiers in plant science · 2015
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Wanessa D WightDepartment of Energy Plant Research Laboratory, Michigan State University, 612 Wilson Road, Room 210, East Lansing, MI 48824, USA.
Roman Labuda
Jonathan D Walton
Michigan State University · US

Funding

BIOSYNTHESIS OF THE CYCLIC PEPTIDE TOXINS OF AMANITA MUSHROOMSR01GM088274 · NIGMS · MICHIGAN STATE UNIVERSITY · PI WALTON, JONATHAN · 2011 to 2014
$1.1M
NIGMS NIH HHS R01 GM088274
6 · The paper itself

Abstract

backgroundHC-toxin, a cyclic tetrapeptide, is a virulence determinant for the plant pathogenic fungus Cochliobolus carbonum. It was recently discovered that another fungus, Alternaria jesenskae, also produces HC-toxin.

resultsThe major genes (collectively known as AjTOX2) involved in the biosynthesis of HC-toxin were identified from A. jesenskae by genomic sequencing. The encoded orthologous proteins share 75-85% amino acid identity, and the genes for HC-toxin biosynthesis are duplicated in both fungi. The genomic organization of the genes in the two fungi show a similar but not identical partial clustering arrangement. A set of representative housekeeping proteins show a similar high level of amino acid identity between C. carbonum and A. jesenskae, which is consistent with the close relatedness of these two genera within the family Pleosporaceae (Dothideomycetes).

conclusionsThis is the first report that the plant virulence factor HC-toxin is made by an organism other than C. carbonum. The genes may have moved by horizontal transfer between the two species, but it cannot be excluded that they were present in a common ancestor and lost from other species of Alternaria and Cochliobolus.

Indexed as

AlternariaBiosynthetic PathwaysDNA, FungalFungal ProteinsGene DuplicationGene OrderGenes, FungalMolecular Sequence DataPeptides, CyclicSequence Analysis, DNASequence Homology, Amino AcidVirulence FactorsDNA, FungalFungal ProteinsHC toxinPeptides, CyclicVirulence Factors

Identifiers

PMID23865912
PMCPMC3729494
OpenAlexW1964485754

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.