Evidence map›Paper›PMID 23865807›Full record

ArticleBiochemistry2013

Competition between homodimerization and cholesterol binding to the C99 domain of the amyloid precursor protein.

Yuanli Song, Eric J Hustedt, Suzanne Brandon, Charles R Sanders

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 118 citations in OpenAlex.

  1. Article
  2. Review
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  7. Towards a Unitary Hypothesis of Alzheimer's Disease Pathogenesis.Journal of Alzheimer's disease : JAD · 2024
    Article
  8. Article
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  10. Review
  11. Article
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  14. PI(4,5)PAdvances in experimental medicine and biology · 2023
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yuanli SongDepartment of Biochemistry and Center for Structural Biology, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, United States.
Eric J Hustedt
Suzanne Brandon
Charles R Sanders
Vanderbilt University · US

Funding

Protein Structure and Dynamics from EPR Spectroscopy and MD SimulationsP01GM080513 · NIGMS · VANDERBILT UNIVERSITY · PI LYBRAND, TERRY P · 2008 to 2012
$5.6M
Cholesterol and the Amyloid Precursor ProteinR01GM106672 · NIGMS · VANDERBILT UNIVERSITY · PI SANDERS, CHARLES R · 2013 to 2016
$1.2M
NIGMS NIH HHS P01 GM080513NIGMS NIH HHS R01 GM106672
6 · The paper itself

Abstract

The 99-residue transmembrane C-terminal domain (C99, also known as β-CTF) of the amyloid precursor protein (APP) is the product of the β-secretase cleavage of the full-length APP and is the substrate for γ-secretase cleavage. The latter cleavage releases the amyloid-β polypeptides that are closely associated with Alzheimer's disease. C99 is thought to form homodimers; however, the free energy in favor of dimerization has not previously been quantitated. It was also recently documented that cholesterol forms a 1:1 complex with monomeric C99 in bicelles. Here, the affinities for both homodimerization and cholesterol binding to C99 were measured in bilayered lipid vesicles using both electron paramagnetic resonance (EPR) and Förster resonance energy transfer (FRET) methods. Homodimerization and cholesterol binding were seen to be competitive processes that center on the transmembrane G₇₀₀XXXG₇₀₄XXXG₇₀₈ glycine-zipper motif and adjacent Gly709. On one hand, the observed Kd for cholesterol binding (Kd = 2.7 ± 0.3 mol %) is on the low end of the physiological cholesterol concentration range in mammalian cell membranes. On the other hand, the observed K(d) for homodimerization (K(d) = 0.47 ± 0.15 mol %) likely exceeds the physiological concentration range for C99. These results suggest that the 1:1 cholesterol/C99 complex will be more highly populated than C99 homodimers under most physiological conditions. These observations are of relevance for understanding the γ-secretase cleavage of C99.

Indexed as

Models, MolecularAmino Acid MotifsAmino Acid SubstitutionAmyloid beta-Protein PrecursorAmyloid Precursor Protein SecretasesBinding SitesCholesterolDimerizationElectron Spin Resonance SpectroscopyFluorescence Resonance Energy TransferGlycineHumansKineticsLipid BilayersMutagenesis, Site-DirectedMutant ProteinsAmyloid beta-Protein Precursoramyloid beta-protein precursor C-terminal fragment beta, humanAmyloid Precursor Protein SecretasesCholesterolGlycineLipid BilayersMutant ProteinsPeptide FragmentsRecombinant Proteins

Identifiers

PMID23865807
PMCPMC3758481
OpenAlexW1986892064

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.