Evidence map›Paper›PMID 23863903›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2013

ERAAP and tapasin independently edit the amino and carboxyl termini of MHC class I peptides.

Takayuki Kanaseki, Kristin Camfield Lind, Hernando Escobar, Niranjana Nagarajan, Eduardo Reyes-Vargas, Brant Rudd, Alan L Rockwood, Luc Van Kaer, Noriyuki Sato, Julio C Delgado and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Antigen Presentation in the Lung.Frontiers in immunology · 2022
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Interaction of TAPBPR, a tapasin homolog, with MHC-I molecules promotes peptide editing.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  12. Article
  13. Observational
  14. Article
  15. The first step of peptide selection in antigen presentation by MHC class I molecules.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  16. Distinct assembly profiles of HLA-B molecules.Journal of immunology (Baltimore, Md. : 1950) · 2014
    Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Takayuki KanasekiDivision of Immunology and Pathogenesis, Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Kristin Camfield Lind
Hernando Escobar
Niranjana Nagarajan
Eduardo Reyes-Vargas
Brant Rudd
Alan L Rockwood
Luc Van Kaer
Noriyuki Sato
Julio C Delgado
Nilabh Shastri
University of California, Berkeley · USUniversity of Utah · USARUP Laboratories (United States) · USSapporo Medical University · JPVanderbilt University · US

Funding

Antigen Processing in the Secretory PathwayR37AI060040 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI SADEGH-NASSERI, SCHEHERAZADE · 2012 to 2021
$4.2M
The Endogenous MHC Class I Antigen Processing PathwayR01AI039548 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI SHASTRI, NILABH · 1997 to 2012
$3.8M
Antigen processing in the secretory pathwayR01AI060040 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI SHASTRI, NILABH · 2004 to 2010
$2.4M
NIAID NIH HHS R01 AI039548NIAID NIH HHS R01 AI060040NIAID NIH HHS R37 AI060040
6 · The paper itself

Abstract

Effective CD8(+) T cell responses depend on presentation of a stable peptide repertoire by MHC class I (MHC I) molecules on the cell surface. The overall quality of peptide-MHC I complexes (pMHC I) is determined by poorly understood mechanisms that generate and load peptides with appropriate consensus motifs onto MHC I. In this article, we show that both tapasin (Tpn), a key component of the peptide loading complex, and the endoplasmic reticulum aminopeptidase associated with Ag processing (ERAAP) are quintessential editors of distinct structural features of the peptide repertoire. We carried out reciprocal immunization of wild-type mice with cells from Tpn- or ERAAP-deficient mice. Specificity analysis of T cell responses showed that absence of Tpn or ERAAP independently altered the peptide repertoire by causing loss as well as gain of new pMHC I. Changes in amino acid sequences of MHC-bound peptides revealed that ERAAP and Tpn, respectively, defined the characteristic amino and carboxy termini of canonical MHC I peptides. Thus, the optimal pMHC I repertoire is produced by two distinct peptide editing steps in the endoplasmic reticulum.

Indexed as

Amino Acid MotifsAmino Acid SequenceAnimalsAntigen PresentationCD8-Positive T-LymphocytesCells, CulturedConsensus SequenceCytotoxicity, ImmunologicEndoplasmic ReticulumEpitopes, T-LymphocyteFemaleH-2 AntigensHistocompatibility Antigen H-2DHistocompatibility Antigens Class ILeucyl AminopeptidaseMembrane Transport ProteinsEpitopes, T-LymphocyteH-2 AntigensH-2Kb protein, mouseHistocompatibility Antigen H-2DHistocompatibility Antigens Class ILeucyl AminopeptidaseMembrane Transport ProteinsPeptide FragmentsProteasome Endopeptidase Complexpuromycin-insensitive leucyl-specific aminopeptidasetapasin

Identifiers

PMID23863903
PMCPMC3735839
OpenAlexW2115730533

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.