Evidence map›Paper›PMID 23863462›Full record

ArticleHuman molecular genetics2013

The SNM1B/APOLLO DNA nuclease functions in resolution of replication stress and maintenance of common fragile site stability.

Jennifer M Mason, Ishita Das, Martin Arlt, Neil Patel, Stephanie Kraftson, Thomas W Glover, JoAnn M Sekiguchi

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

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  9. From Human Cytogenetics to Human Chromosomics.International journal of molecular sciences · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jennifer M MasonDepartment of Human Genetics and.
Ishita Das
Martin Arlt
Neil Patel
Stephanie Kraftson
Thomas W Glover
JoAnn M Sekiguchi
University of Michigan–Ann Arbor · US

Funding

CELLULAR AND MOLECULAR BIOLOGY AT MICHIGANT32GM007315 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PUTHENVEEDU, MANOJKUMAR A · 1985 to 2021
$12.8M
PREDOCTORAL TRAINING IN GENETICST32GM007544 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1985 to 2022
$11.3M
Roles of the Artemis nuclease in DNA repair and diseaseR01AI063058 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SEKIGUCHI, JOANN · 2005 to 2013
$3.0M
NIAID NIH HHS AI063058NIAID NIH HHS R01 AI063058NIGMS NIH HHS T32 GM007315NIGMS NIH HHS T32-GM007315NIGMS NIH HHS T32 GM007544NIGMS NIH HHS T32-GM007544
6 · The paper itself

Abstract

SNM1B/Apollo is a DNA nuclease that has important functions in telomere maintenance and repair of DNA interstrand crosslinks (ICLs) within the Fanconi anemia (FA) pathway. SNM1B is required for efficient localization of key repair proteins, such as the FA protein, FANCD2, to sites of ICL damage and functions epistatically to FANCD2 in cellular survival to ICLs and homology-directed repair. The FA pathway is also activated in response to replication fork stalling. Here, we sought to determine the importance of SNM1B in cellular responses to stalled forks in the absence of a blocking lesion, such as ICLs. We found that depletion of SNM1B results in hypersensitivity to aphidicolin, a DNA polymerase inhibitor that causes replication stress. We observed that the SNM1B nuclease is required for efficient localization of the DNA repair proteins, FANCD2 and BRCA1, to subnuclear foci upon aphidicolin treatment, thereby indicating SNM1B facilitates direct repair of stalled forks. Consistent with a role for SNM1B subsequent to recognition of the lesion, we found that SNM1B is dispensable for upstream events, including activation of ATR-dependent signaling and localization of RPA, γH2AX and the MRE11/RAD50/NBS1 complex to aphidicolin-induced foci. We determined that a major consequence of SNM1B depletion is a marked increase in spontaneous and aphidicolin-induced chromosomal gaps and breaks, including breakage at common fragile sites. Thus, this study provides evidence that SNM1B functions in resolving replication stress and preventing accumulation of genomic damage.

Indexed as

Chromosome Fragile SitesDNA ReplicationGenomic InstabilityAmino Acid MotifsAmino Acid SequenceAphidicolinBRCA1 ProteinCell LineCell NucleusCell SurvivalChromatinDNA DamageDNA RepairDNA Repair EnzymesExodeoxyribonucleasesFanconi Anemia Complementation Group D2 ProteinAphidicolinBRCA1 ProteinChromatinDCLRE1B protein, humanDNA Repair EnzymesExodeoxyribonucleasesFanconi Anemia Complementation Group D2 ProteinH2AX protein, humanHistonesMultiprotein ComplexesNuclear ProteinsReplication Protein A

Identifiers

PMID23863462
PMCPMC3836474
OpenAlexW2169054397

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.