ArticlePloS one2013
3-dimensional diffusion tensor imaging (DTI) atlas of the rat brain.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
30 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Diffusion Tensor Imaging-Based Studies at the Group-Level Applied to Animal Models of Neurodegenerative Diseases.Frontiers in neuroscience · 2020Pooled it
- Review
- Quantitative diffusion imaging and genotype-by-sex interactions in a rat model of Alexander disease.Magnetic resonance in medicine · 2024Article
- The brainstem connectome database.Scientific data · 2022Article
- Investigating the effects of chronic perinatal alcohol and combined nicotine and alcohol exposure on dopaminergic and non-dopaminergic neurons in the VTA.Scientific reports · 2021Article
- Age-Specific Adult Rat Brain MRI Templates and Tissue Probability Maps.Frontiers in neuroinformatics · 2021Article
- Investigating the influence of perinatal nicotine and alcohol exposure on the genetic profiles of dopaminergic neurons in the VTA using miRNA-mRNA analysis.Scientific reports · 2020Article
- An MRI-Derived Neuroanatomical Atlas of the Fischer 344 Rat Brain.Scientific reports · 2020Article
- Stress-Induced Microstructural Alterations Correlate With the Cognitive Performance of Rats: A LongitudinalFrontiers in neuroscience · 2020Article
- Stereotaxic Diffusion Tensor Imaging White Matter Atlas for theFrontiers in neuroanatomy · 2020Article
- Exercise ameliorates deficits in neural microstructure in a Disc1 model of psychiatric illness.Magnetic resonance imaging · 2019Article
- Refractory diet-dependent changes in neural microstructure: Implications for microstructural endophenotypes of neurologic and psychiatric disease.Magnetic resonance imaging · 2019Article
- Sex-specific deficits in neurite density and white matter integrity are associated with targeted disruption of exon 2 of the Disc1 gene in the rat.Translational psychiatry · 2019Article
- Convergent microstructural brain changes across genetic models of autism spectrum disorder-A pilot study.Psychiatry research. Neuroimaging · 2019Article
- Towards Differential Connectomics with NeuroVIISAS.Neuroinformatics · 2019Article
- A three-dimensional digital neurological atlas of the mustached bat (Pteronotus parnellii).NeuroImage · 2018Article
- Gut microbiome populations are associated with structure-specific changes in white matter architecture.Translational psychiatry · 2018Article
- Adult rat cortical thickness changes across age and following adolescent intermittent ethanol treatment.Addiction biology · 2017Article
- Flexible, Penetrating Brain Probes Enabled by Advances in Polymer Microfabrication.Micromachines · 2016Review
- Diffusion tensor imaging reveals adolescent binge ethanol-induced brain structural integrity alterations in adult rats that correlate with behavioral dysfunction.Addiction biology · 2016Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
Abstract
Anatomical atlases play an important role in the analysis of neuroimaging data in rodent neuroimaging studies. Having a high resolution, detailed atlas not only can expand understanding of rodent brain anatomy, but also enables automatic segmentation of new images, thus greatly increasing the efficiency of future analysis when applied to new data. These atlases can be used to analyze new scans of individual cases using a variety of automated segmentation methods. This project seeks to develop a set of detailed 3D anatomical atlases of the brain at postnatal day 5 (P5), 14 (P14), and adults (P72) in Sprague-Dawley rats. Our methods consisted of first creating a template image based on fixed scans of control rats, then manually segmenting various individual brain regions on the template. Using itk-SNAP software, subcortical and cortical regions, including both white matter and gray matter structures, were manually segmented in the axial, sagittal, and coronal planes. The P5, P14, and P72 atlases had 39, 45, and 29 regions segmented, respectively. These atlases have been made available to the broader research community.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.