Evidence map›Paper›PMID 23861668›Full record

ArticlePLoS genetics2013

Effective blocking of the white enhancer requires cooperation between two main mechanisms suggested for the insulator function.

Olga Kyrchanova, Oksana Maksimenko, Viacheslav Stakhov, Tatyana Ivlieva, Alexander Parshikov, Vasily M Studitsky, Pavel Georgiev

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
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  3. Polycomb Recruiters Inside and Outside of the Repressed Domains.International journal of molecular sciences · 2023
    Review
  4. Boundary Bypass Activity in thebioRxiv : the preprint server for biology · 2023
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  5. Mechanisms of Interaction between Enhancers and Promoters in ThreeInternational journal of molecular sciences · 2023
    Review
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  7. Article
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  10. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Olga KyrchanovaGroup of Transcriptional Regulation, Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russia.
Oksana Maksimenko
Viacheslav Stakhov
Tatyana Ivlieva
Alexander Parshikov
Vasily M Studitsky
Pavel Georgiev
Institute of Gene Biology · RUJohnson University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromatin insulators block the action of transcriptional enhancers when interposed between an enhancer and a promoter. In this study, we examined the role of chromatin loops formed by two unrelated insulators, gypsy and Fab-7, in their enhancer-blocking activity. To test for this activity, we selected the white reporter gene that is activated by the eye-specific enhancer. The results showed that one copy of the gypsy or Fab-7 insulator failed to block the eye enhancer in most of genomic sites, whereas a chromatin loop formed by two gypsy insulators flanking either the eye enhancer or the reporter completely blocked white stimulation by the enhancer. However, strong enhancer blocking was achieved due not only to chromatin loop formation but also to the direct interaction of the gypsy insulator with the eye enhancer, which was confirmed by the 3C assay. In particular, it was observed that Mod(mdg4)-67.2, a component of the gypsy insulator, interacted with the Zeste protein, which is critical for the eye enhancer-white promoter communication. These results suggest that efficient enhancer blocking depends on the combination of two factors: chromatin loop formation by paired insulators, which generates physical constraints for enhancer-promoter communication, and the direct interaction of proteins recruited to an insulator and to the enhancer-promoter pair.

Indexed as

Promoter Regions, GeneticAnimalsAnimals, Genetically ModifiedATP-Binding Cassette TransportersBinding SitesChromatinDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsEnhancer Elements, GeneticEyeEye ProteinsGenes, ReporterInsulator ElementsRecombinant ProteinsTranscription FactorsATP-Binding Cassette TransportersChromatinDNA-Binding ProteinsDrosophila ProteinsEye Proteinsmdg4 protein (gypsy)Recombinant ProteinsTranscription Factorsw protein, Drosophilaz protein, Drosophila

Identifiers

PMID23861668
PMCPMC3701704
OpenAlexW2053546389

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.