Evidence map›Paper›PMID 23861540›Full record

ArticleScience signaling2013

Receptor tyrosine kinases fall into distinct classes based on their inferred signaling networks.

Joel P Wagner, Alejandro Wolf-Yadlin, Mark Sevecka, Jennifer K Grenier, David E Root, Douglas A Lauffenburger, Gavin MacBeath

Open access · greenAbstract read
In one paragraph

Article in Science signaling, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
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  4. Article
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  10. Genomic Status ofCancer research · 2018
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  16. Reverse Phase Protein Arrays for Compound Profiling.Current protocols in chemical biology · 2016
    Article
  17. Review
  18. Integrating Murine and Clinical Trials with Cabozantinib to Understand Roles of MET and VEGFR2 as Targets for Growth Inhibition of Prostate Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2016
    Article
  19. Article
  20. Multiscale analysis of the murine intestine for modeling human diseases.Integrative biology : quantitative biosciences from nano to macro · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Joel P Wagner *Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA.
Alejandro Wolf-Yadlin *Department of Chemistry & Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138, USA.
Mark SeveckaDepartment of Chemistry & Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138, USA.
Jennifer K GrenierBroad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA.
David E RootBroad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA.
Douglas A LauffenburgerDepartment of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA.
Gavin MacBeathDepartment of Chemistry & Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, MA 02138, USA.
Broad Institute · USHarvard University · USMassachusetts Institute of Technology · USCenter for Systems Biology · US

Funding

Systems Biology of Cell Decision ProcessesP50GM068762 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI YAFFE, MICHAEL B · 2003 to 2012
$32.3M
Tumor Cell Networks CenterU54CA112967 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LAUFFENBURGER, DOUGLAS A · 2004 to 2015
$26.2M
Engineered Antibody EGFR Antagonist Cancer TherapeuticsR01CA096504 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WITTRUP, KARL DANE · 2002 to 2017
$9.7M
Microlysis Technology: Enabling Cell Type-Specific Proteomics in Living TissueRC1HG005354 · NHGRI · HARVARD UNIVERSITY · PI MACBEATH, GAVIN · 2009 to 2010
$980k
Quantitative, multiplexed and high-throughput: macroarrays of lysate microarraysR21CA126720 · NCI · HARVARD UNIVERSITY · PI MACBEATH, GAVIN · 2008 to 2009
$368k
NCI NIH HHS R01 CA096504NCI NIH HHS R21 CA126720NCI NIH HHS U54 CA112967NHGRI NIH HHS RC1 HG005354NIGMS NIH HHS P50 GM068762
6 · The paper itself

Abstract

Although many anticancer drugs that target receptor tyrosine kinases (RTKs) provide clinical benefit, their long-term use is limited by resistance that is often attributed to increased abundance or activation of another RTK that compensates for the inhibited receptor. To uncover common and unique features in the signaling networks of RTKs, we measured time-dependent signaling in six isogenic cell lines, each expressing a different RTK as downstream proteins were systematically perturbed by RNA interference. Network models inferred from the data revealed a conserved set of signaling pathways and RTK-specific features that grouped the RTKs into three distinct classes: (i) an EGFR/FGFR1/c-Met class constituting epidermal growth factor receptor, fibroblast growth factor receptor 1, and the hepatocyte growth factor receptor c-Met; (ii) an IGF-1R/NTRK2 class constituting insulin-like growth factor 1 receptor and neurotrophic tyrosine receptor kinase 2; and (iii) a PDGFRβ class constituting platelet-derived growth factor receptor β. Analysis of cancer cell line data showed that many RTKs of the same class were coexpressed and that increased abundance of an RTK or its cognate ligand frequently correlated with resistance to a drug targeting another RTK of the same class. In contrast, abundance of an RTK or ligand of one class generally did not affect sensitivity to a drug targeting an RTK of a different class. Thus, classifying RTKs by their inferred networks and then therapeutically targeting multiple receptors within a class may delay or prevent the onset of resistance.

Indexed as

Models, BiologicalCell Line, TumorGene Expression Regulation, EnzymologicHEK293 CellsHumansReceptor Protein-Tyrosine KinasesSignal TransductionReceptor Protein-Tyrosine Kinases

Identifiers

PMID23861540
PMCPMC3987808
OpenAlexW1482622484

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.