Evidence map›Paper›PMID 23861396›Full record

ArticleThe Journal of biological chemistry2013

Structural basis of a physical blockage mechanism for the interaction of response regulator PmrA with connector protein PmrD from Klebsiella pneumoniae.

Shih-Chi Luo, Yuan-Chao Lou, Mahalingam Rajasekaran, Yi-Wei Chang, Chwan-Deng Hsiao, Chinpan Chen

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Shih-Chi LuoFrom the Institutes of Biomedical Sciences and.
Yuan-Chao LouFrom the Institutes of Biomedical Sciences and.
Mahalingam RajasekaranFrom the Institutes of Biomedical Sciences and.
Yi-Wei ChangMolecular Biology, Academia Sinica, Taipei 115, Taiwan and.
Chwan-Deng HsiaoMolecular Biology, Academia Sinica, Taipei 115, Taiwan and.
Chinpan ChenFrom the Institutes of Biomedical Sciences and; Agricultural Biotechnology Center, National Chung Hsing University, Taichung 40227, Taiwan. Electronic address: bmchinp@ibms.sinica.edu.tw.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In bacteria, the two-component system is the most prevalent for sensing and transducing environmental signals into the cell. The PmrA-PmrB two-component system, responsible for sensing external stimuli of high Fe(3+) and mild acidic conditions, can control the genes involved in lipopolysaccharide modification and polymyxin resistance in pathogens. In Klebsiella pneumoniae, the small basic connector protein PmrD protects phospho-PmrA and prolongs the expression of PmrA-activated genes. We previously determined the phospho-PmrA recognition mode of PmrD. However, how PmrA interacts with PmrD and prevents its dephosphorylation remains unknown. To address this question, we solved the x-ray crystal structure of the N-terminal receiver domain of BeF3(-)-activated PmrA (PmrA(N)) at 1.70 Å. With this structure, we applied the data-driven docking method based on NMR chemical shift perturbation to generate the complex model of PmrD-PmrA(N), which was further validated by site-directed spin labeling experiments. In the complex model, PmrD may act as a blockade to prevent phosphatase from contacting with the phosphorylation site on PmrA.

Indexed as

Bacterial ProteinsCrystallography, X-RayGene Expression Regulation, BacterialIronKlebsiella pneumoniaeNuclear Magnetic Resonance, BiomolecularPhosphorylationProtein BindingProtein Structure, QuaternaryProtein Structure, TertiaryBacterial ProteinsIronpmrA protein, BacteriaDrug ResistanceMolecular DockingNMRProtein-protein InteractionReceiver DomainResponse RegulatorSignal TransductionSite-directed MutagenesisSite-directed Spin LabelingTwo-component System

Identifiers

PMID23861396
PMCPMC3757216

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.