ArticleMarine biotechnology (New York, N.Y.)2013
Characterization of the Zhikong scallop (Chlamys farreri) mantle transcriptome and identification of biomineralization-related genes.
Article in Marine biotechnology (New York, N.Y.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed, 51 citations in OpenAlex.
- Transcriptomic and Metabolomic Insights into Growth Heterosis ofInternational journal of molecular sciences · 2026Article
- Proteomic characterization of a foraminiferal test's organic matrix.Proceedings of the National Academy of Sciences of the United States of America · 2024Article
- Insights into the Structure and Function of TRIP-1, a Newly Identified Member in Calcified Tissues.Biomolecules · 2023Article
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- Salinity stress-induced differentially expressed miRNAs and target genes in sea cucumbers Apostichopus japonicus.Cell stress & chaperones · 2019Article
- Acute effects of UVB radiation on the survival, growth, development, and reproduction of Daphniopsis tibetana Sars (Crustacea: Cladocera).Environmental science and pollution research international · 2019Article
- Mantle transcriptome sequencing ofPeerJ · 2019Article
- Transcriptional changes in the Japanese scallop (Mizuhopecten yessoensis) shellinfested by Polydora provide insights into the molecular mechanism of shell formation and immunomodulation.Scientific reports · 2018Article
- Bias and Correction in RNA-seq Data for Marine Species.Marine biotechnology (New York, N.Y.) · 2017Article
- High throughput sequencing of RNA transcriptomes in Ruditapes philippinarum identifies genes involved in osmotic stress response.Scientific reports · 2017Article
- A Genome-Wide Association Study Identifies the Genomic Region Associated with Shell Color in Yesso Scallop, Patinopecten yessoensis.Marine biotechnology (New York, N.Y.) · 2017Article
- Transcriptome analysis of the freshwater pearl mussel (Cristaria plicata) mantle unravels genes involved in the formation of shell and pearl.Molecular genetics and genomics : MGG · 2017Article
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- De novo Transcriptome Generation and Annotation for Two Korean Endemic Land Snails, Aegista chejuensis and Aegista quelpartensis, Using Illumina Paired-End Sequencing Technology.International journal of molecular sciences · 2016Article
- Sea shell diversity and rapidly evolving secretomes: insights into the evolution of biomineralization.Frontiers in zoology · 2016Review
- The Shell of the Invasive Bivalve Species Dreissena polymorpha: Biochemical, Elemental and Textural Investigations.PloS one · 2016Article
- Article
- Integration of Transcriptomic and Proteomic Approaches Provides a Core Set of Genes for Understanding of Scallop Attachment.Marine biotechnology (New York, N.Y.) · 2015Article
- Transcriptome analysis of shell color-related genes in the clam Meretrix meretrix.Marine biotechnology (New York, N.Y.) · 2015Article
- Article
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Authors and funding
7 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Chlamys farreri is a significant species in aquaculture and fishery in East Asia. A deep understanding of its shell formation by studying the transcriptome of the mantle, a key organ in shell formation, could provide important guidance for its culture. Thus, we sequenced and analyzed the mantle transcriptome of C. farreri. The 77,975 unigenes were generated after Illumina sequencing and de novo assembly. The unigenes were annotated using authoritative databases (non-redundant (NR), COG, Gene Ontology (GO), and KEGG) to obtain functional information. BLASTX alignment was performed between unigenes and reported proteins related to biomineralization. The results identified 53 homologous genes representing 17 matrix proteins, most of which are involved in calcite formation, and 171 homologies with 26 proteins related to general processes of biomineralization. The discovery and unusually high expression of MSP-1 suggested its importance in scallops. Homologous unigenes with aragonite-formation-related matrix proteins were much fewer compared with those related to calcite formation. The results implied that, in C. farreri, the number and proportion of matrix proteins related to aragonite formation is much lower than those related to calcite formation, which was consistent with the proportions of aragonite and calcite in C. farreri shells. Thus, the formation of different polymorphs of calcium carbonate (calcite and aragonite) in molluskan shells is regulated by different groups of proteins. Moreover, 17 candidate unigenes, which are probably involved in biomineralization, were predicted by screening for gene products with secreted domains and tandem-arranged repeat units. Our results contribute to the understanding of biomineralization processes and the evolution of shell formation.
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