Evidence map›Paper›PMID 23860490›Full record

ArticleThe Journal of general virology2013

Phylogenetic and histological variation in avipoxviruses isolated in South Africa.

Kristy Offerman, Olivia Carulei, Tertius A Gous, Nicola Douglass, Anna-Lise Williamson

Open access · greenAbstract read
In one paragraph

Article in The Journal of general virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 40 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Kristy OffermanDivision of Medical Virology, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa.
Olivia CaruleiDivision of Medical Virology, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa.
Tertius A GousSpecialist Veterinary Pathologist, Cape Town, South Africa.
Nicola DouglassDivision of Medical Virology, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa.
Anna-Lise WilliamsonInstitute of Infectious Disease and Molecular Medicine, University of Cape Town and National Health Laboratory Service, Groote Schuur Hospital, Cape Town, South Africa.
University of Cape Town · ZANational Health Laboratory Service · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thirteen novel avipoxviruses were isolated from birds from different regions of South Africa. These viruses could be divided into six groups, according to gross pathology and pock appearance on chick chorioallantoic membranes (CAMs). Histopathology revealed distinct differences in epidermal and mesodermal cell proliferation, as well as immune cell infiltration, caused by the different avipoxviruses, even within groups of viruses causing similar CAM gross pathology. In order to determine the genetic relationships among the viruses, several conserved poxvirus genetic regions, corresponding to vaccinia virus (VACV) A3L (fpv167 locus, VACV P4b), G8R (fpv126 locus, VLTF-1), H3L (fpv140 locus, VACV H3L) and A11R-A12L (fpv175-176 locus) were analysed phylogenetically. The South African avipoxvirus isolates in this study all grouped in clade A, in either subclade A2 or A3 of the genus Avipoxvirus and differ from the commercial fowlpox vaccines (subclade A1) in use in the South African poultry industry. Analysis of different loci resulted in different branching patterns. There was no correlation between gross morphology, histopathology, pock morphology and phylogenetic grouping. There was also no correlation between geographical distribution and virus phenotype or genotype.

Indexed as

AnimalsAvipoxvirusBird DiseasesBirdsDNA, ViralGene Expression Regulation, ViralGenetic VariationMolecular Sequence DataPhylogenyPoxviridae InfectionsRNA, ViralSouth AfricaViral ProteinsDNA, ViralRNA, ViralViral Proteins

Identifiers

PMID23860490
PMCPMC3785031
OpenAlexW2098383413

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.