Evidence map›Paper›PMID 23858036›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2013

Human CD1a deficiency is common and genetically regulated.

Chetan Seshadri, Meera Shenoy, Richard D Wells, Tiffany Hensley-McBain, Erica Andersen-Nissen, M Juliana McElrath, Tan-Yun Cheng, D Branch Moody, Thomas R Hawn

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

  1. Association of CD1 and FcγR gene polymorphisms with Guillain-Barré syndrome susceptibility: a meta-analysis.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2018
    Pooled it
  2. Review
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  7. The Phagocytosis ofInternational journal of molecular sciences · 2022
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  17. Four pathways of CD1 antigen presentation to T cells.Current opinion in immunology · 2017
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Chetan SeshadriDivision of Allergy and Infectious Diseases, Department of Medicine, University of Washington, Seattle, WA 98195, USA. seshadri@u.washington.edu
Meera Shenoy
Richard D Wells
Tiffany Hensley-McBain
Erica Andersen-Nissen
M Juliana McElrath
Tan-Yun Cheng
D Branch Moody
Thomas R Hawn
University of Washington · USBrigham and Women's Hospital · USFred Hutch Cancer Center · USCancer Research Center · US

Funding

INFECTIOUS DISEASE AND BASIC MICROBIOLOGICAL MECHANISMST32AI007061 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Marcia B Goldberg · 1985 to 2026
$12.1M
T cell response to CDI-restricted lipids in tuberculosisR01AI049313 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI MOODY, DAVID BRANCH · 2001 to 2025
$10.6M
CD1 Presentation of Self Lipids to Human T CellsR01AR048632 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI MOODY, DAVID BRANCH · 2002 to 2024
$9.4M
CD1 autoreactive T cells in human inflammatory skin diseaseR37AR048632 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI DAVID Branch MOODY · 2025 to 2026
$1.1M
Innate Immunogenetics & Human InfectionsK24AI089794 · NIAID · UNIVERSITY OF WASHINGTON · PI HAWN, THOMAS R · 2010 to 2014
$746k
The Role of CD1a in Protecting Against Human TuberculosisK08AI089938 · NIAID · UNIVERSITY OF WASHINGTON · PI SESHADRI, CHETAN · 2010 to 2014
$634k
NIAID NIH HHS 1K24AI089794NIAID NIH HHS K08 AI089938NIAID NIH HHS K08-AI89938NIAID NIH HHS K24 AI089794NIAID NIH HHS L30 AI090891NIAID NIH HHS R01 AI049313NIAID NIH HHS T32 AI007061NIAMS NIH HHS R37 AR048632
6 · The paper itself

Abstract

CD1 proteins evolved to present diverse lipid Ags to T cells. In comparison with MHC proteins, CD1 proteins exhibit minimal allelic diversity as a result of nonsynonymous single nucleotide polymorphisms (SNPs). However, it is unknown if common SNPs in gene regulatory regions affect CD1 expression and function. We report surprising diversity in patterns of inducible CD1a expression on human dendritic cells (DCs), spanning the full range from undetectable to high density, a finding not seen with other CD1 isoforms. CD1a-deficient DCs failed to present mycobacterial lipopeptide to T cells but had no defects in endocytosis, cytokine secretion, or expression of costimulatory molecules after LPS treatment. We identified an SNP in the 5' untranslated region (rs366316) that was common and strongly associated with low CD1a surface expression and mRNA levels (p = 0.03 and p = 0.001, respectively). Using a CD1a promoter-luciferase system in combination with mutagenesis studies, we found that the polymorphic allele reduced luciferase expression by 44% compared with the wild-type variant (p < 0.001). Genetic regulation of lipid Ag presentation by varying expression on human DCs provides a mechanism for achieving population level differences in immune responses despite limited structural variation in CD1a proteins.

Indexed as

Polymorphism, Single Nucleotide5' Untranslated RegionsAntigens, CD1Cells, CulturedCytokinesDendritic CellsEndocytosisEscherichia coliFemaleGenes, ReporterGenetic VariationHumansLipopeptidesLipopolysaccharidesMaleMutagenesis, Site-Directed5' Untranslated RegionsAntigens, CD1CD1a antigenCytokinesdideoxymycobactinLipopeptidesLipopolysaccharidesOxazolesRNA, Messenger

Identifiers

PMID23858036
PMCPMC3748949
OpenAlexW2155547995

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.