Evidence map›Paper›PMID 23857120›Full record

SynthesisMolecular psychiatry2014

ATP5H/KCTD2 locus is associated with Alzheimer's disease risk.

M Boada, C Antúnez, R Ramírez-Lorca, A L DeStefano, A González-Pérez, J Gayán, J López-Arrieta, M A Ikram, I Hernández, J Marín and 27 more

Open access · hybridAbstract readMeta-Analysis
In one paragraph

Synthesis in Molecular psychiatry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
4.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 68 citations in OpenAlex.

  1. Pooled it
  2. KCTD Family: Emerging Regulators of GPCR Biased Signaling.Handbook of experimental pharmacology · 2026
    Review
  3. Article
  4. Article
  5. KCTD10 regulates brain development by destabilizing brain disorder-associated protein KCTD13.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Members of the KCTD family are major regulators of cAMP signaling.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Review
  15. The ATP Synthase Deficiency in Human Diseases.Life (Basel, Switzerland) · 2021
    Review
  16. Review
  17. Review
  18. Shared genetic etiology underlying late-onset Alzheimer's disease and posttraumatic stress syndrome.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2020
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors at 12 institutions in 4 countries.

M Boada1] Memory Clinic of Fundació ACE, Institut Català de Neurociències Aplicades, Barcelona, Spain [2] Hospital Universitari Vall d'Hebron-Institut de Recerca, Universitat Autònoma de Barcelona (VHIR-UAB), Barcelona, Spain.
C AntúnezDementia Unit, University Hospital Virgen de la Arrixaca, Murcia, Spain.
R Ramírez-LorcaDepartment of Structural Genomics, Neocodex, Sevilla, Spain.
A L DeStefano1] Department of Neurology Boston University School of Medicine, Boston, MA, USA [2] Department of Biostatistics, Boston University School of Medicine, Boston, MA, USA.
A González-PérezDepartment of Structural Genomics, Neocodex, Sevilla, Spain.
J GayánDepartment of Structural Genomics, Neocodex, Sevilla, Spain.
J López-ArrietaMemory Unit, University Hospital La Paz-Cantoblanco, Madrid, Spain.
M A IkramDepartment of Epidemiology, Erasmus MC University Medical Center, Rotterdam, The Netherlands; Netherlands Consortium for Healthy Aging, Leiden, The Netherlands.
I HernándezMemory Clinic of Fundació ACE, Institut Català de Neurociències Aplicades, Barcelona, Spain.
J MarínDementia Unit, University Hospital Virgen de la Arrixaca, Murcia, Spain.
J J GalánDepartment of Structural Genomics, Neocodex, Sevilla, Spain.
J C BisDepartment of Medicine, University of Washington, Seattle, WA, USA.
A MauleónMemory Clinic of Fundació ACE, Institut Català de Neurociències Aplicades, Barcelona, Spain.
M Rosende-RocaMemory Clinic of Fundació ACE, Institut Català de Neurociències Aplicades, Barcelona, Spain.
C Moreno-ReyDepartment of Structural Genomics, Neocodex, Sevilla, Spain.
V GudnassonIcelandic Heart Association, Kopavogur University of Iceland, Kopavogur, Iceland.
F J MorónDepartment of Structural Genomics, Neocodex, Sevilla, Spain.
J VelascoDepartment of Structural Genomics, Neocodex, Sevilla, Spain.
J M CarrascoDepartment of Structural Genomics, Neocodex, Sevilla, Spain.
M AlegretMemory Clinic of Fundació ACE, Institut Català de Neurociències Aplicades, Barcelona, Spain.
A EspinosaMemory Clinic of Fundació ACE, Institut Català de Neurociències Aplicades, Barcelona, Spain.
G VinyesMemory Clinic of Fundació ACE, Institut Català de Neurociències Aplicades, Barcelona, Spain.
A LafuenteMemory Clinic of Fundació ACE, Institut Català de Neurociències Aplicades, Barcelona, Spain.
L VargasMemory Clinic of Fundació ACE, Institut Català de Neurociències Aplicades, Barcelona, Spain.
A L FitzpatrickDepartment of Medicine, University of Washington, Seattle, WA, USA.
Alzheimer’s Disease Neuroimaging Initiative
L J LaunerLaboratory of Epidemiology, Demography, and Biometry, Intramural Research Program, National Institute on Aging, Washington, DC, USA.
M E SáezDepartment of Structural Genomics, Neocodex, Sevilla, Spain.
E VázquezDepartment of Structural Genomics, Neocodex, Sevilla, Spain.
J T BeckerAlzheimer's Disease Research Center, Departments of Neurology, Psychiatry and Psychology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
O L LópezAlzheimer's Disease Research Center, Departments of Neurology, Psychiatry and Psychology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
M Serrano-RíosCentro de Investigación Biomédica en Red de Diabetes y Enfermedades Metabólicas Asociadas (CIBERDEM) Spain, Hospital Clínico San Carlos, Madrid, Spain.
L TárragaMemory Clinic of Fundació ACE, Institut Català de Neurociències Aplicades, Barcelona, Spain.
C M van DuijnDepartment of Epidemiology, Erasmus MC University Medical Center, Rotterdam, The Netherlands; Netherlands Consortium for Healthy Aging, Leiden, The Netherlands.
L M RealDepartment of Structural Genomics, Neocodex, Sevilla, Spain.
S Seshadri1] Department of Neurology Boston University School of Medicine, Boston, MA, USA [2] Department of Biostatistics, Boston University School of Medicine, Boston, MA, USA [3] National Heart, Lung and Blood Institute's Framingham Heart Study, Framingham, MA, USA.
A Ruiz1] Memory Clinic of Fundació ACE, Institut Català de Neurociències Aplicades, Barcelona, Spain [2] Department of Structural Genomics, Neocodex, Sevilla, Spain.
Fundació ACE · ESUniversity of Washington · USBoston University · USUniversity of Pittsburgh · USHospital Universitario La Paz · ESHospital Universitario Virgen de la Arrixaca · ESUniversity of Iceland · ISFramingham Heart Study · USHospital Clínico San Carlos · ESInstitute on Aging · USNetherlands Consortium for Healthy Ageing · NLVall d'Hebron Institut de Recerca · ES

Funding

Alzheimer's Disease Neuroimaging Initiative - SupplementU01AG024904 · NIA · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI WEINER, MICHAEL W · 2004 to 2015
$121.0M
National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD)U24AG021886 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI TATIANA M. FOROUD · 2002 to 2026
$119.8M
TREATMENT OF DEPRESSION IN ALZHEIMER'S DISEASEP50AG005133 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KAMBOH, M. ILYAS · 1985 to 2019
$43.0M
UC Davis Alzheimer's Disease Core CenterP30AG010129 · NIA · UNIVERSITY OF CALIFORNIA DAVIS · PI MEYER, OANH L · 1991 to 2020
$28.3M
PRECURSORS OF STROKE INCIDENCE AND PROGNOSISR01NS017950 · NINDS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Hugo Javier Aparicio, Jose Rafael Romero · 1985 to 2026
$22.9M
EPIDEMIOLOGY OF DEMENTIA IN THE FRAMINGHAM STUDYR01AG008122 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI AU, RHODA, SESHADRI, SUDHA · 1989 to 2015
$14.4M
CHARGE Consortium: Omics Discovery for CVD and Aging PhenotypesR01HL105756 · NHLBI · UNIVERSITY OF WASHINGTON · PI Bruce M Psaty, NICHOLAS L SMITH · 2011 to 2026
$9.5M
CHARGE: Identifying Risk & Protective SNV for AD in ADSP Case-control SampleU01AG049505 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI SESHADRI, SUDHA · 2014 to 2017
$3.0M
Genetic Markers of Brain AgingZIAAG007270 · NIA · NATIONAL INSTITUTE ON AGING · PI LAUNER, LENORE J · 2009 to 2025
$2.7M
"MR Morphometrics and Cognitive Decline Rate in Large-Scale Aging Studies"K01AG030514 · NIA · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CARMICHAEL, OWEN T. · 2008 to 2012
$495k
NHLBI NIH HHS R01 HL105756NIA NIH HHS K01 AG030514NIA NIH HHS P30 AG010129NIA NIH HHS P50 AG005133NIA NIH HHS R01 AG008122NIA NIH HHS U01 AG024904NIA NIH HHS U01 AG049505NIA NIH HHS U24 AG021886NINDS NIH HHS R01 NS017950
6 · The paper itself

Abstract

To identify loci associated with Alzheimer disease, we conducted a three-stage analysis using existing genome-wide association studies (GWAS) and genotyping in a new sample. In Stage I, all suggestive single-nucleotide polymorphisms (at P<0.001) in a previously reported GWAS of seven independent studies (8082 Alzheimer's disease (AD) cases; 12 040 controls) were selected, and in Stage II these were examined in an in silico analysis within the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium GWAS (1367 cases and 12904 controls). Six novel signals reaching P<5 × 10(-6) were genotyped in an independent Stage III sample (the Fundació ACE data set) of 2200 sporadic AD patients and 2301 controls. We identified a novel association with AD in the adenosine triphosphate (ATP) synthase, H+ transporting, mitochondrial F0 (ATP5H)/Potassium channel tetramerization domain-containing protein 2 (KCTD2) locus, which reached genome-wide significance in the combined discovery and genotyping sample (rs11870474, odds ratio (OR)=1.58, P=2.6 × 10(-7) in discovery and OR=1.43, P=0.004 in Fundació ACE data set; combined OR=1.53, P=4.7 × 10(-9)). This ATP5H/KCTD2 locus has an important function in mitochondrial energy production and neuronal hyperpolarization during cellular stress conditions, such as hypoxia or glucose deprivation.

Indexed as

Aged, 80 and overAlzheimer DiseaseCohort StudiesComputer SimulationFemaleGenetic LociGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotyping TechniquesHumansMaleMiddle AgedMitochondrial ADP, ATP TranslocasesPolymorphism, Single NucleotideATP5PD protein, humanMitochondrial ADP, ATP Translocases

Identifiers

PMID23857120
PMCPMC4031637
OpenAlexW2082657879

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.