ReviewMolecular bioSystems2013
Network representations and methods for the analysis of chemical and biochemical pathways.
Review in Molecular bioSystems, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
10 citing papers in PubMed.
- Physical Chemistry Models for Chemical Research in the XXth and XXIst Centuries.ACS physical chemistry Au · 2024Review
- What makes a reaction network "chemical"?Journal of cheminformatics · 2022Article
- A mechanism foreLife · 2020Article
- Knowledge discovery through chemical space networks: the case of organic electronics.Journal of molecular modeling · 2019Article
- Universal scaling across biochemical networks on Earth.Science advances · 2019Article
- Analysis of stochastic bifurcations with phase portraits.PloS one · 2018Article
- Energy-based analysis of biomolecular pathways.Proceedings. Mathematical, physical, and engineering sciences · 2017Article
- Metabolic network motifs can provide novel insights into evolution: The evolutionary origin of Eukaryotic organelles as a case study.Computational biology and chemistry · 2014Article
- Thiazolidinones derived from dynamic systemic resolution of complex reversible-reaction networks.Chemistry (Weinheim an der Bergstrasse, Germany) · 2014Article
- The ecology of collective behavior.PLoS biology · 2014Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
Systems biologists increasingly use network representations to investigate biochemical pathways and their dynamic behaviours. In this critical review, we discuss four commonly used network representations of chemical and biochemical pathways. We illustrate how some of these representations reduce network complexity but result in the ambiguous representation of biochemical pathways. We also examine the current theoretical approaches available to investigate the dynamic behaviour of chemical and biochemical networks. Finally, we describe how the critical chemical and biochemical pathways responsible for emergent dynamic behaviour can be identified using network mining and functional mapping approaches.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.