Evidence map›Paper›PMID 23856972›Full record

ArticleElectrophoresis2013

Targeted metabolic profiling of hepatocellular carcinoma and hepatitis C using LC-MS/MS.

Hamid Baniasadi, G A Nagana Gowda, Haiwei Gu, Ao Zeng, Shui Zhuang, Nicholas Skill, Mary Maluccio, Daniel Raftery

Abstract read
In one paragraph

Article in Electrophoresis, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Metabolomics in viral hepatitis: advances and review.Frontiers in cellular and infection microbiology · 2023
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Cancers · 2020
    Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hamid BaniasadiDepartment of Chemistry, Purdue University, West Lafayette, IN, USA.
G A Nagana Gowda
Haiwei Gu
Ao Zeng
Shui Zhuang
Nicholas Skill
Mary Maluccio
Daniel Raftery

Funding

Metabolomics-based Identification of Hepatocellular Cancer BiomarkersR21CA133770 · NCI · PURDUE UNIVERSITY · PI MALUCCIO, MARY ALICE, RAFTERY, DANIEL · 2009 to 2010
$376k
NCI NIH HHS 1R21CA133770NCI NIH HHS R21 CA133770
6 · The paper itself

Abstract

Hepatitis C virus (HCV) infection of the liver is a global health problem and a major risk factor for the development of hepatocellular carcinoma (HCC). Sensitive methods are needed for the improved and earlier detection of HCC, which would provide better therapy options. Metabolic profiling of the high-risk population (HCV patients) and those with HCC provides insights into the process of liver carcinogenesis and possible biomarkers for earlier cancer detection. Seventy-three blood metabolites were quantitatively profiled in HCC (n = 30) and cirrhotic HCV (n = 22) patients using a targeted approach based on LC-MS/MS. Sixteen of 73 targeted metabolites differed significantly (p < 0.05) and their levels varied up to a factor of 3.3 between HCC and HCV. Four of these 16 metabolites (methionine, 5-hydroxymethyl-2'-deoxyuridine, N2,N2-dimethylguanosine, and uric acid) that showed the lowest p values were used to develop and internally validate a classification model using partial least squares discriminant analysis. The model exhibited high classification accuracy for distinguishing the two groups with sensitivity, specificity, and area under the receiver operating characteristic curve of 97%, 95%, and 0.98, respectively. A number of perturbed metabolic pathways, including amino acid, purine, and nucleotide metabolism, were identified based on the 16 biomarker candidates. These results provide a promising methodology to distinguish cirrhotic HCV patients, who are at high risk to develop HCC, from those who have already progressed to HCC. The results also provide insights into the altered metabolism between HCC and HCV.

Indexed as

MetabolomeAgedCarcinoma, HepatocellularChromatography, LiquidFemaleHepatitis CHumansLiverLiver NeoplasmsMaleMetabolomicsMiddle AgedTandem Mass SpectrometryCancerHepatitis C virusHepatocellular carcinomaLC-MS/MSMetabolomics

Identifiers

PMID23856972
PMCPMC3826436

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.