Evidence map›Paper›PMID 23855748›Full record

ArticleMolecular microbiology2013

Structure of the transcriptional network controlling white-opaque switching in Candida albicans.

Aaron D Hernday, Matthew B Lohse, Polly M Fordyce, Clarissa J Nobile, Joseph L DeRisi, Alexander D Johnson

Abstract read
In one paragraph

Article in Molecular microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed.

  1. Review
  2. Article
  3. The unique Efg1 fungal virulence regulon in the catheterized bladder environment.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Paralogs of thebioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Mining Genetically Encoded Biosensors from Filamentous Fungi.Journal of fungi (Basel, Switzerland) · 2026
    Review
  11. Genetic and environmental control of parasexual reproduction in the pathogenicMicrobiology and molecular biology reviews : MMBR · 2025
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Is Cryptococcus neoformans a pleomorphic fungus?Current opinion in microbiology · 2024
    Review
  19. Article
  20. White-opaque switching inMicrobiology and molecular biology reviews : MMBR · 2024
    Review

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Aaron D HerndayDepartment of Microbiology and Immunology, University of California San Francisco, San Francisco, CA, 94158, USA.
Matthew B Lohse
Polly M Fordyce
Clarissa J Nobile
Joseph L DeRisi
Alexander D Johnson

Funding

Regulatory Circuits and Virulence in Candida albicansR01AI049187 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSON, ALEXANDER D · 2001 to 2021
$13.1M
Genetic Analysis of the Transcriptional Network Governing C. albicans BiofilmsK99AI100896 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI NOBILE, CLARISSA JANE · 2012 to 2012
$127k
Characterizing the White/Opaque Phenotypic Switch Circuitry in Candida albicansF32AI071433 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HERNDAY, AARON D · 2008 to 2009
$108k
Howard Hughes Medical InstituteNIAID NIH HHS F32 AI071433NIAID NIH HHS F32AI071433NIAID NIH HHS K99 AI100896NIAID NIH HHS K99AI100896NIAID NIH HHS R01 AI049187NIAID NIH HHS R01AI049187
6 · The paper itself

Abstract

The human fungal pathogen Candida albicans can switch between two phenotypic cell types, termed 'white' and 'opaque'. Both cell types are heritable for many generations, and the switch between the two types occurs epigenetically, that is, without a change in the primary DNA sequence of the genome. Previous work identified six key transcriptional regulators important for white-opaque switching: Wor1, Wor2, Wor3, Czf1, Efg1, and Ahr1. In this work, we describe the structure of the transcriptional network that specifies the white and opaque cell types and governs the ability to switch between them. In particular, we use a combination of genome-wide chromatin immunoprecipitation, gene expression profiling, and microfluidics-based DNA binding experiments to determine the direct and indirect regulatory interactions that form the switch network. The six regulators are arranged together in a complex, interlocking network with many seemingly redundant and overlapping connections. We propose that the structure (or topology) of this network is responsible for the epigenetic maintenance of the white and opaque states, the switching between them, and the specialized properties of each state.

Indexed as

Gene Regulatory NetworksCandida albicansChromatin ImmunoprecipitationDNA, FungalEpigenesis, GeneticGene Expression ProfilingHumansMicrofluidicsModels, BiologicalPhenotypeProtein BindingDNA, Fungal

Identifiers

PMID23855748
PMCPMC3888361

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.