Evidence map›Paper›PMID 23853713›Full record

ArticleeLife2013

Hypothemycin, a fungal natural product, identifies therapeutic targets in Trypanosoma brucei [corrected].

Mari Nishino, Jonathan W Choy, Nathan N Gushwa, Juan A Oses-Prieto, Kyriacos Koupparis, Alma L Burlingame, Adam R Renslo, James H McKerrow, Jack Taunton

Erratum issuedOpen access · goldAbstract readValidation Study
In one paragraph

Article in eLife, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 50 citations in OpenAlex.

  1. Review
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  5. Efficient synthesis of (±)-de-Tetrahedron letters · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Mari NishinoTetrad Graduate Program , University of California, San Francisco , San Francisco , United States ; Center for Discovery and Innovation in Parasitic Diseases , University of California, San Francisco , San Francisco , United States.
Jonathan W Choy
Nathan N Gushwa
Juan A Oses-Prieto
Kyriacos Koupparis
Alma L Burlingame
Adam R Renslo
James H McKerrow
Jack Taunton
University of California, San Francisco · USCenter for Discovery · US

Funding

RESEARCH TRAINING IN CHEMISTRY AND CHEMICAL BIOLOGYT32GM064337 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CRAIK, CHARLES SCOTT · 2002 to 2021
$7.8M
Bio-Organic Biomedical Mass Spectromy ResourceP41GM103481 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURLINGAME, ALMA L · 2012 to 2015
$6.4M
Highly Selective, Irreversible Protein Kinase InhibitorsR01GM071434 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI TAUNTON, JACK · 2005 to 2008
$1.1M
NIGMS NIH HHS GM071434NIGMS NIH HHS P41 GM103481NIGMS NIH HHS R01 GM071434NIGMS NIH HHS T32 GM064337
6 · The paper itself

Abstract

Protein kinases are potentially attractive therapeutic targets for neglected parasitic diseases, including African trypanosomiasis caused by the protozoan, Trypanosoma brucei. How to prioritize T. brucei kinases and quantify their intracellular engagement by small-molecule inhibitors remain unsolved problems. Here, we combine chemoproteomics and RNA interference to interrogate trypanosome kinases bearing a Cys-Asp-Xaa-Gly motif (CDXG kinases). We discovered that hypothemycin, a fungal polyketide previously shown to covalently inactivate a subset of human CDXG kinases, kills T. brucei in culture and in infected mice. Quantitative chemoproteomic analysis with a hypothemycin-based probe revealed the relative sensitivity of endogenous CDXG kinases, including TbGSK3short and a previously uncharacterized kinase, TbCLK1. RNAi-mediated knockdown demonstrated that both kinases are essential, but only TbCLK1 is fully engaged by cytotoxic concentrations of hypothemycin in intact cells. Our study identifies TbCLK1 as a therapeutic target for African trypanosomiasis and establishes a new chemoproteomic tool for interrogating CDXG kinases in their native context. DOI:http://dx.doi.org/10.7554/eLife.00712.001.

Indexed as

Affinity LabelsAntiprotozoal AgentsFungiMass SpectrometryTrypanosoma brucei bruceiZearalenoneAffinity LabelsAntiprotozoal AgentshypothemycinZearalenonechemoproteomicshypothemycinMouseOtherprotein kinaseT. brucei

Identifiers

PMID23853713
PMCPMC3707081
OpenAlexW2102265632

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.