Evidence map›Paper›PMID 23853603›Full record

ArticlePLoS pathogens2013

Mosaic VSGs and the scale of Trypanosoma brucei antigenic variation.

James P J Hall, Huanhuan Wang, J David Barry

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 131 citations in OpenAlex.

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  17. Review
  18. DNA Double-Strand Breaks: A Double-Edged Sword for Trypanosomatids.Frontiers in cell and developmental biology · 2021
    Review
  19. Repeat-Driven Generation of Antigenic Diversity in a Major Human Pathogen,Frontiers in cellular and infection microbiology · 2021
    Article
  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

James P J HallWellcome Trust Centre for Molecular Parasitology, University of Glasgow, Glasgow, United Kingdom. james.hall@york.ac.uk
Huanhuan Wang
J David Barry
Wellcome Centre for Molecular Parasitology · GBWellcome Trust · GB

Funding

Wellcome TrustWellcome Trust 055558Wellcome Trust 083224Wellcome Trust 085349
6 · The paper itself

Abstract

A main determinant of prolonged Trypanosoma brucei infection and transmission and success of the parasite is the interplay between host acquired immunity and antigenic variation of the parasite variant surface glycoprotein (VSG) coat. About 0.1% of trypanosome divisions produce a switch to a different VSG through differential expression of an archive of hundreds of silent VSG genes and pseudogenes, but the patterns and extent of the trypanosome diversity phenotype, particularly in chronic infection, are unclear. We applied longitudinal VSG cDNA sequencing to estimate variant richness and test whether pseudogenes contribute to antigenic variation. We show that individual growth peaks can contain at least 15 distinct variants, are estimated computationally to comprise many more, and that antigenically distinct 'mosaic' VSGs arise from segmental gene conversion between donor VSG genes or pseudogenes. The potential for trypanosome antigenic variation is probably much greater than VSG archive size; mosaic VSGs are core to antigenic variation and chronic infection.

Indexed as

Antigenic VariationGenetic VariationAnimalsAntibodies, ProtozoanAntigens, ProtozoanFemaleGenes, ProtozoanMembrane GlycoproteinsMiceMice, Inbred BALB COrganisms, Genetically ModifiedProtozoan ProteinsPseudogenesRNA, ProtozoanSurface PropertiesTime FactorsAntibodies, ProtozoanAntigens, ProtozoanMembrane GlycoproteinsProtozoan ProteinsRNA, Protozoan

Identifiers

PMID23853603
PMCPMC3708902
OpenAlexW2041308771

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.