Evidence map›Paper›PMID 23853575›Full record

ArticlePLoS pathogens2013

Glycan masking of Plasmodium vivax Duffy Binding Protein for probing protein binding function and vaccine development.

Sowmya Sampath, Chris Carrico, Joel Janes, Sairam Gurumoorthy, Claire Gibson, Martin Melcher, Chetan E Chitnis, Ruobing Wang, William R Schief, Joseph D Smith

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
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  15. Article
  16. Caged protein nanoparticles for drug delivery.Current opinion in biotechnology · 2014
    Review
  17. Review
  18. Malaria adhesins: structure and function.Cellular microbiology · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Sowmya SampathSeattle Biomedical Research Institute, Seattle, Washington, United States of America.
Chris Carrico
Joel Janes
Sairam Gurumoorthy
Claire Gibson
Martin Melcher
Chetan E Chitnis
Ruobing Wang
William R Schief
Joseph D Smith
Center for Infectious Disease Research · USUniversity of Washington · USInternational Centre for Genetic Engineering and Biotechnology · INScripps Research Institute · US

Funding

Immunogen design to enhance the efficacy of Plasmodium vivax vaccineR56AI082603 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI SMITH, JOSEPH D · 2009 to 2009
$811k
Immunogen Design to enhance the efficacy of Plasmodium vivax vaccineR21AI088554 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI SMITH, JOSEPH D · 2010 to 2011
$514k
NIAID NIH HHS 1R21AI088554-01NIAID NIH HHS R21 AI088554NIAID NIH HHS R56 AI082603NIAID NIH HHS R56 AI082603-01
6 · The paper itself

Abstract

Glycan masking is an emerging vaccine design strategy to focus antibody responses to specific epitopes, but it has mostly been evaluated on the already heavily glycosylated HIV gp120 envelope glycoprotein. Here this approach was used to investigate the binding interaction of Plasmodium vivax Duffy Binding Protein (PvDBP) and the Duffy Antigen Receptor for Chemokines (DARC) and to evaluate if glycan-masked PvDBPII immunogens would focus the antibody response on key interaction surfaces. Four variants of PVDBPII were generated and probed for function and immunogenicity. Whereas two PvDBPII glycosylation variants with increased glycan surface coverage distant from predicted interaction sites had equivalent binding activity to wild-type protein, one of them elicited slightly better DARC-binding-inhibitory activity than wild-type immunogen. Conversely, the addition of an N-glycosylation site adjacent to a predicted PvDBP interaction site both abolished its interaction with DARC and resulted in weaker inhibitory antibody responses. PvDBP is composed of three subdomains and is thought to function as a dimer; a meta-analysis of published PvDBP mutants and the new DBPII glycosylation variants indicates that critical DARC binding residues are concentrated at the dimer interface and along a relatively flat surface spanning portions of two subdomains. Our findings suggest that DARC-binding-inhibitory antibody epitope(s) lie close to the predicted DARC interaction site, and that addition of N-glycan sites distant from this site may augment inhibitory antibodies. Thus, glycan resurfacing is an attractive and feasible tool to investigate protein structure-function, and glycan-masked PvDBPII immunogens might contribute to P. vivax vaccine development.

Indexed as

AnimalsAntibodies, NeutralizingAntibodies, ProtozoanAntigens, ProtozoanChlorocebus aethiopsCOS CellsDuffy Blood-Group SystemGlycosylationMalaria VaccinesMicePlasmodium vivaxProtein BindingProtozoan ProteinsRatsReceptors, Cell SurfaceACKR1 protein, humanAntibodies, NeutralizingAntibodies, ProtozoanAntigens, ProtozoanDuffy antigen binding protein, PlasmodiumDuffy Blood-Group SystemMalaria VaccinesProtozoan ProteinsReceptors, Cell Surface

Identifiers

PMID23853575
PMCPMC3681752
OpenAlexW1976497124

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.