Evidence map›Paper›PMID 23852783›Full record

ArticleJournal of clinical laboratory analysis2013

Evaluation of in-house loop-mediated isothermal amplification (LAMP) assay for rapid diagnosis of M. tuberculosis in pulmonary specimens.

Sunil Sethi, Sunil Kumar Sethi, Sumeet Singh, Sunil Kumar Dhatwalia, Rakesh Yadav, Abhishek Mewara, Malkit Singh, Rupinder Tewari, Meera Sharma

Erratum issuedAbstract readEvaluation Study
In one paragraph

Article in Journal of clinical laboratory analysis, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 3 pooled it
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 3 syntheses or guidelines pooled it, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

  • Erratum issued
    Sethi, Sunil Kumar [corrected to Sethi, Sunil]
5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Sunil SethiDepartment of Medical Microbiology, Postgraduate Institute of Medical Education and Research, Chandigarh, India. sunilsethi10@hotmail.com
Sunil Kumar SethiDepartment of Medical Microbiology, Postgraduate Institute of Medical Education and Research, Chandigarh, India. sunilsethi10@hotmail.com
Sumeet Singh
Sunil Kumar Dhatwalia
Rakesh Yadav
Abhishek Mewara
Malkit Singh
Rupinder Tewari
Meera Sharma
Post Graduate Institute of Medical Education and Research · INPanjab University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLoop-mediated isothermal amplification (LAMP) assay has come forward as a rapid, cost-effective molecular technique for diagnosis of tuberculosis (TB) in developing countries. This study evaluated Mycobacterium tuberculosis-specific in-house LAMP assay targeting 16s rRNA and compared it with other conventional tests and nucleic acid amplification assay (IS6110 PCR).

methodsA total of 133 sputum specimens (103 from suspected pulmonary TB cases and 30 from non-TB controls) were subjected to conventional tests, IS6110 PCR and 16s rRNA LAMP assay.

resultsOf the 103 patients, the maximum number of cases were found to be positive by LAMP assay, that is, in 87 (84.5%) patients, followed by culture positive in 78 (75.7%), IS6110 PCR in 74 (71.8%), and smear positive in 70 (67.9%) patients. Of the 83 smear positive and/or culture positive cases, LAMP detected 77 (92.77%) cases, and was found to be superior to IS6110 PCR, which could detect 69 (83.1%) cases; a concordance of 0.6 was obtained between the two tests using kappa statistics.

conclusionOverall, LAMP was simple and efficacious for early diagnosis of smear positive, culture positive cases as well as for confirmation of smear negative, culture negative cases, and was found to be superior to IS6110 PCR.

Indexed as

HumansMycobacterium tuberculosisNucleic Acid Amplification TechniquesRNA, Ribosomal, 16SSputumTuberculosis, PulmonaryRNA, Ribosomal, 16S16s rRNA LAMPIS6110Mycobacterium tuberculosispulmonary TB

Identifiers

PMID23852783
PMCPMC6807494
OpenAlexW2138240005

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.