Evidence map›Paper›PMID 23852128›Full record

ArticleThe Journal of infectious diseases2013

The distribution of HIV DNA and RNA in cell subsets differs in gut and blood of HIV-positive patients on ART: implications for viral persistence.

Steven A Yukl, Amandeep K Shergill, Terence Ho, Maudi Killian, Valerie Girling, Lorrie Epling, Peilin Li, Lisa K Wong, Pierre Crouch, Steven G Deeks and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers.

0numbers the graph read from it
0cells of the map it votes in
132citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

132 citing papers in PubMed, 179 citations in OpenAlex.

  1. Trial
  2. HCV-specific CD4EBioMedicine · 2026
    Article
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  4. Article
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  7. Review
  8. Article
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  12. Article
  13. Review
  14. Review
  15. Review
  16. Article
  17. Metformin Enhances Antibody-Mediated Recognition of HIV-Infected CD4bioRxiv : the preprint server for biology · 2024
    Article
  18. Delivering CRISPR to the HIV-1 reservoirs.Frontiers in microbiology · 2024
    Review
  19. Article
  20. Article

72 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Steven A YuklDepartment of Medicine, San Francisco VA Medical Center and University of California, San Francisco.
Amandeep K Shergill
Terence Ho
Maudi Killian
Valerie Girling
Lorrie Epling
Peilin Li
Lisa K Wong
Pierre Crouch
Steven G Deeks
Diane V Havlir
Kenneth McQuaid
Elizabeth Sinclair
Joseph K Wong
San Francisco VA Medical Center · USSan Francisco General Hospital · USUniversity of California, San Francisco · USUniversity of California, Berkeley · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Viral reservoirs and sanctuaries in HAART - treated patients: role and mechanismsU19AI096109 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SCHACKER, TIMOTHY W · 2011 to 2015
$29.5M
Preventing the Establishment of Enfuvirtide-resistance in the Latent ReservoirK24AI069994 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT · 2007 to 2016
$1.5M
Role of Gut Associated Lymphoid Tissue in HIV PersistenceR56AI091573 · NIAID · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI WONG, JOSEPH K · 2011 to 2011
$643k
Quantification of HIV Reservoirs in the Gut-Associated Lymphatic SystemIK2CX000520 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI YUKL, STEVEN A · 2011 to 2015
–
CSRD VA IK2 CX000520NIAID NIH HHS K24 AI069994NIAID NIH HHS P30 AI027763NIAID NIH HHS P30-AI027763NIAID NIH HHS R56 AI091573NIAID NIH HHS R56AI091573NIAID NIH HHS U19 AI096109
6 · The paper itself

Abstract

Even with optimal antiretroviral therapy, human immunodeficiency virus (HIV) persists in plasma, blood cells, and tissues. To develop new therapies, it is essential to know what cell types harbor residual HIV. We measured levels of HIV DNA, RNA, and RNA/DNA ratios in sorted subsets of CD4+ T cells (CCR7+, transitional memory, and effector memory) and non-CD4+ T leukocytes from blood, ileum, and rectum of 8 ART-suppressed HIV-positive subjects. Levels of HIV DNA/million cells in CCR7+ and effector memory cells were higher in the ileum than blood. When normalized by cell frequencies, most HIV DNA and RNA in the blood were found in CCR7+ cells, whereas in both gut sites, most HIV DNA and RNA were found in effector memory cells. HIV DNA and RNA were observed in non-CD4+ T leukocytes at low levels, particularly in gut tissues. Compared to the blood, the ileum had higher levels of HIV DNA and RNA in both CD4+ T cells and non-CD4+ T leukocytes, whereas the rectum had higher HIV DNA levels in both cell types but lower RNA levels in CD4+ T cells. Future studies should determine whether different mechanisms allow HIV to persist in these distinct reservoirs, and the degree to which different therapies can affect each reservoir.

Indexed as

AdultAnti-Retroviral AgentsCD4-Positive T-LymphocytesDNA, ViralFlow CytometryHIVHIV InfectionsHumansLeukocytes, MononuclearLymphocyte SubsetsMaleMiddle AgedRNA, ViralStatistics, NonparametricViral LoadAnti-Retroviral AgentsDNA, ViralRNA, ViralARTCD4+ T cellgutHIVHIV-1ileumintestinepersistencerectumreservoir

Identifiers

PMID23852128
PMCPMC3778964
OpenAlexW2135817676

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.