ArticlePlanta2013
Identification of miRNAs and miRNA-mediated regulatory pathways in Carica papaya.
Article in Planta, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed, 34 citations in OpenAlex.
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- Differential expression of microRNAs in response toFrontiers in plant science · 2024Article
- Integrated miRNA, target mRNA, and metabolome profiling of3 Biotech · 2022Article
- Small RNA sequencing and identification of papaya (Carica papaya L.) miRNAs with potential cross-kingdom human gene targets.Molecular genetics and genomics : MGG · 2022Article
- Profiling of MicroRNAs Involved in Mepiquat Chloride-Mediated Inhibition of Internode Elongation in Cotton (Frontiers in plant science · 2021Article
- High-Throughput Sequencing-Based Identification of Arabidopsis miRNAs Induced byFrontiers in microbiology · 2020Article
- The Role of UV-B light on Small RNA Activity During Grapevine Berry Development.G3 (Bethesda, Md.) · 2019Article
- A Novel LncRNA,Frontiers in plant science · 2018Article
- Integrated mRNA and microRNA transcriptome variations in the multi-tepal mutant provide insights into the floral patterning of the orchid Cymbidium goeringii.BMC genomics · 2017Article
- A genome-wide analysis of the RNA-guided silencing pathway in coffee reveals insights into its regulatory mechanisms.PloS one · 2017Article
- Involvement of Small RNAs in Phosphorus and Sulfur Sensing, Signaling and Stress: Current Update.Frontiers in plant science · 2017Review
- Article
- Review
- Bioinformatic identification and expression analysis of banana microRNAs and their targets.PloS one · 2015Article
- Article
Corrections and comments
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Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Plant microRNAs (miRNAs) post-transcriptionally regulate target gene expression to modulate growth and development and biotic and abiotic stress responses. By analyzing small RNA deep sequencing data in combination with the genome sequence, we identified 75 conserved miRNAs and 11 novel miRNAs. Their target genes were also predicted. For most conserved miRNAs, the miRNA-target pairs were conserved across plant species. In addition to these conserved miRNA-target pairs, we also identified some papaya-specific miRNA-target regulatory pathways. Both miR168 and miR530 target the Argonaute 1 gene, indicating a second autoregulatory mechanism for miRNA regulation. A non-conserved miRNA was mapped within an intron of Dicer-like 1 (DCL1), suggesting a conserved homeostatic autoregulatory mechanism for DCL1 expression. A 21-nt miRNA triggers secondary siRNA production from its target genes, nucleotide-binding site leucine-rich repeat protein genes. Certain phased-miRNAs were processed from their conserved miRNA precursors, indicating a putative miRNA evolution mechanism. In addition, we identified a Carica papaya-specific miRNA that targets an ethylene receptor gene, implying its function in the ethylene signaling pathway. This work will also advance our understanding of miRNA functions and evolution in plants.
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Registered trials
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