Evidence map›Paper›PMID 23851028›Full record

ArticleHuman molecular genetics2013

Different selective pressures shape the evolution of Toll-like receptors in human and African great ape populations.

Hélène Quach, Daniel Wilson, Guillaume Laval, Etienne Patin, Jeremy Manry, Jessica Guibert, Luis B Barreiro, Eric Nerrienet, Ernst Verschoor, Antoine Gessain and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 54 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 8 institutions in 7 countries.

Hélène QuachUnit of Human Evolutionary Genetics.
Daniel Wilson
Guillaume Laval
Etienne Patin
Jeremy Manry
Jessica Guibert
Luis B Barreiro
Eric Nerrienet
Ernst Verschoor
Antoine Gessain
Molly Przeworski
Lluis Quintana-Murci
Institut de Biologia Evolutiva · ESCentre National de la Recherche Scientifique · FRBiomedical Primate Research Centre · NLCentre for Human Genetics · GBCentre Pasteur du Cameroun · CMHoward Hughes Medical Institute · USInstitut Pasteur · FRUniversité de Montréal · CA

Funding

Identifying human adaptations: theory and applicationsR01GM072861 · NIGMS · UNIVERSITY OF CHICAGO · PI PRZEWORSKI, MOLLY F · 2005 to 2009
$982k
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM72861
6 · The paper itself

Abstract

The study of the genetic and selective landscape of immunity genes across primates can provide insight into the existing differences in susceptibility to infection observed between human and non-human primates. Here, we explored how selection has driven the evolution of a key family of innate immunity receptors, the Toll-like receptors (TLRs), in African great ape species. We sequenced the 10 TLRs in various populations of chimpanzees and gorillas, and analysed these data jointly with a human data set. We found that purifying selection has been more pervasive in great apes than in humans. Furthermore, in chimpanzees and gorillas, purifying selection has targeted TLRs irrespectively of whether they are endosomal or cell surface, in contrast to humans where strong selective constraints are restricted to endosomal TLRs. These observations suggest important differences in the relative importance of TLR-mediated pathogen sensing, such as that of recognition of flagellated bacteria by TLR5, between humans and great apes. Lastly, we used a population genetics-phylogenetics method that jointly analyses polymorphism and divergence data to detect fine-scale variation in selection pressures at specific codons within TLR genes. We identified different codons at different TLRs as being under positive selection in each species, highlighting that functional variation at these genes has conferred a selective advantage in immunity to infection to specific primate species. Overall, this study showed that the degree of selection driving the evolution of TLRs has largely differed between human and non-human primates, increasing our knowledge on their respective biological contribution to host defence in the natural setting.

Indexed as

Evolution, MolecularAnimalsBase SequenceGenetic VariationGenomeGorilla gorillaHumansImmunity, InnateMolecular Sequence DataPan troglodytesPhylogenyPolymorphism, Single NucleotideSelection, GeneticSequence Analysis, DNASpecies SpecificityToll-Like ReceptorsToll-Like Receptors

Identifiers

PMID23851028
PMCPMC3820138
OpenAlexW2147890509

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.