Evidence map›Paper›PMID 23851007›Full record

ArticleFEBS letters2013

Co-evolution of HAD phosphatase and hotdog-fold thioesterase domain function in the menaquinone-pathway fusion proteins BF1314 and PG1653.

Min Wang, Feng Song, Rui Wu, Karen N Allen, Patrick S Mariano, Debra Dunaway-Mariano

Open access · bronzeAbstract read
In one paragraph

Article in FEBS letters, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Min WangDepartment of Chemistry & Chemical Biology, University of New Mexico, Albuquerque, NM 87131, USA.
Feng Song
Rui Wu
Karen N Allen
Patrick S Mariano
Debra Dunaway-Mariano
University of New Mexico · USBoston University · US

Funding

MECHANISMS OF ENZYME CATALYSISR01GM028688 · NIGMS · UNIVERSITY OF NEW MEXICO · PI DUNAWAY-MARIANO, DEBRA · 1985 to 2011
$3.9M
NIGMS NIH HHS R01 GM028688NIGMS NIH HHS R01 GM28688
6 · The paper itself

Abstract

The function of a Bacteroidetes menaquinone biosynthetic pathway fusion protein comprised of an N-terminal haloacid dehalogenase (HAD) family domain and a C-terminal hotdog-fold family domain is described. Whereas the thioesterase domain efficiently catalyzes 1,4-dihydroxynapthoyl-CoA hydrolysis, an intermediate step in the menaquinone pathway, the HAD domain is devoid of catalytic activity. In some Bacteroidetes a homologous, catalytically active 1,4-dihydroxynapthoyl-CoA thioesterase replaces the fusion protein. Following the gene fusion event, sequence divergence resulted in a HAD domain that functions solely as the oligomerization domain of an otherwise inactive thioesterase domain.

Indexed as

Amino Acid SequenceBacterial ProteinsBacteroidetesBiosynthetic PathwaysCatalytic DomainEvolution, MolecularHydrolasesKineticsModels, MolecularMolecular Sequence DataPhosphoric Monoester HydrolasesProtein Interaction Domains and MotifsProtein MultimerizationProtein Structure, SecondaryRecombinant Fusion ProteinsThiolester Hydrolases2-haloacid dehalogenaseBacterial ProteinsHydrolasesPhosphoric Monoester HydrolasesRecombinant Fusion ProteinsThiolester HydrolasesVitamin K 214-Dihroxynapthoyl-coenzyme A2-(N-morpholino)ethanesulfonateBacteroides fragilisCoAcoenzyme AEnzyme evolutionEnzyme superfamilyHADhaloacid dehalogenaseHaloacid dehalogenaseHEPESIPTGisopropyl-1-thio-β-d-galactopyranosideMESN-(2-hydroxyethyl)piperazine-N′-2-ethanesulfonatePorphyromonas gingivalis

Identifiers

PMID23851007
PMCPMC3912074
OpenAlexW2024329540

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.