Evidence map›Paper›PMID 23850489›Full record

ArticleMolecular cell2013

Proteomic analysis of coregulators bound to ERα on DNA and nucleosomes reveals coregulator dynamics.

Charles E Foulds, Qin Feng, Chen Ding, Suzanna Bailey, Tamra L Hunsaker, Anna Malovannaya, Ross A Hamilton, Leah A Gates, Zheng Zhang, Chunshu Li and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 114 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Asymmetric allostery in estrogen receptor-α homodimers drives responses to the ensemble of estrogens in the hormonal milieu.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. Review
  12. Article
  13. Enhancer-promoter entanglement explains their transcriptional interdependence.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 1 institution in 1 country.

Charles E FouldsDepartment of Molecular and Cellular Biology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.
Qin Feng
Chen Ding
Suzanna Bailey
Tamra L Hunsaker
Anna Malovannaya
Ross A Hamilton
Leah A Gates
Zheng Zhang
Chunshu Li
Doug Chan
Amol Bajaj
Celetta G Callaway
Dean P Edwards
David M Lonard
Sophia Y Tsai
Ming-Jer Tsai
Jun Qin
Bert W O'Malley
Baylor College of Medicine · US

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DAVID R ROWLEY · 2007 to 2026
$73.9M
TISSUE COACTIVATOR AND RECEPTOR EXPRESSION FINGERPRINTSP01DK059820 · NIDDK · INSTITUT DE GENETIQUE ET BIOLOGIE MOLECU · PI O'MALLEY, BERT W · 2001 to 2016
$23.1M
REPRODUCTIVE HORMONES: BIOLOGICAL AND MOLECULAR ACTIONSR01HD008188 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI DAVID M LONARD, JOHN P LYDON · 1985 to 2026
$16.3M
SEX HORMONE RECEPTOR COMPONENTS AND THE CELL GENOMER01HD007857 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI DAVID M LONARD, JOHN P LYDON · 1985 to 2026
$14.6M
Diabetes Endocrinology Research CenterP30DK079638 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI CHAN, LAWRENCE · 2008 to 2012
$6.4M
CARM1 Function in Hepatic Lipid and Glucose MetabolismK01DK084209 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI FENG, QIN · 2009 to 2011
$353k
NCI NIH HHS P30 CA125123NICHD NIH HHS 5 R01 HD008188NICHD NIH HHS R01 HD007857NICHD NIH HHS R01 HD008188NIDDK NIH HHS 2 P01 DK059820NIDDK NIH HHS 5 K01 DK084209NIDDK NIH HHS K01 DK084209NIDDK NIH HHS P01 DK059820NIDDK NIH HHS P30 DK079638NIDDK NIH HHS P30DK079638PJ4
6 · The paper itself

Abstract

Chromatin immunoprecipitation studies have mapped protein occupancies at many genomic loci. However, a detailed picture of the complexity of coregulators (CoRs) bound to a defined enhancer along with a transcription factor is missing. To address this, we used biotin-DNA pull-down assays coupled with mass spectrometry-immunoblotting to identify at least 17 CoRs from nuclear extracts bound to 17β-estradiol (E2)-liganded estrogen receptor-α on estrogen response elements (EREs). Unexpectedly, these complexes initially are biochemically stable and contain certain atypical corepressors. Addition of ATP dynamically converts these complexes to an "activated" state by phosphorylation events, primarily mediated by DNA-dependent protein kinase. Importantly, a "natural" ERE-containing enhancer and nucleosomal EREs recruit similar complexes. We further discovered the mechanism whereby H3K4me3 stimulates ERα-mediated transcription as compared with unmodified nucleosomes. H3K4me3 templates promote specific CoR dynamics in the presence of ATP and AcCoA, as manifested by CBP/p300 and SRC-3 dismissal and SAGA and TFIID stabilization/recruitment.

Indexed as

Gene Expression Regulation, NeoplasticProteomicsBreast NeoplasmsChromatin ImmunoprecipitationDNADNA-Activated Protein KinaseDNA-Binding ProteinsE1A-Associated p300 ProteinEstrogen Receptor alphaEstrogensFemaleForkhead Box Protein O1Forkhead Transcription FactorsHeLa CellsHumansMCF-7 Cellsbone sialoprotein (35-62), humanDNADNA-Activated Protein KinaseDNA-Binding ProteinsE1A-Associated p300 ProteinEP300 protein, humanESR1 protein, humanEstrogen Receptor alphaEstrogensForkhead Box Protein O1Forkhead Transcription FactorsFOXO1 protein, humanMultiprotein ComplexesNCOA3 protein, humanNuclear ProteinsNuclear Receptor Coactivator 3NucleosomesPeptide FragmentsPRKDC protein, humanSialoglycoproteinsTrans-Activators

Identifiers

PMID23850489
PMCPMC3900250
OpenAlexW1973036877

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.