Evidence map›Paper›PMID 23850453›Full record

ArticleStructure (London, England : 1993)2013

IcmQ in the Type 4b secretion system contains an NAD+ binding domain.

Jeremiah D Farelli, James C Gumbart, Ildikó V Akey, Andrew Hempstead, Whitney Amyot, James F Head, C James McKnight, Ralph R Isberg, Christopher W Akey

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Biological Diversity and Evolution of Type IV Secretion Systems.Current topics in microbiology and immunology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Jeremiah D FarelliDepartment of Physiology and Biophysics, Boston University School of Medicine, 700 Albany Street, Boston, MA 02118-2526, USA.
James C Gumbart
Ildikó V Akey
Andrew Hempstead
Whitney Amyot
James F Head
C James McKnight
Ralph R Isberg
Christopher W Akey
Boston University · USTufts University · USGeorgia Institute of Technology · US

Funding

Innovative Supercomputing for Breakthrough Molecular DynamicsRC2GM093307 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI DITTRICH, MARKUS · 2009 to 2010
$2.7M
COMBATING INFECTION THROUGH ATOMIC-SCALE MODELING OF UNIQUE BACTERIAL SYSTEMSK22AI100927 · NIAID · GEORGIA INSTITUTE OF TECHNOLOGY · PI GUMBART, JAMES C. · 2013 to 2014
$269k
Howard Hughes Medical InstituteNIAID NIH HHS K22 AI100927NIAID NIH HHS K22-AI100927NIGMS NIH HHS RC2 GM093307NIGMS NIH HHS RC2GM093307
6 · The paper itself

Abstract

A Type 4b secretion system (T4bSS) is required for Legionella growth in alveolar macrophages. IcmQ associates with IcmR, binds to membranes, and has a critical role in the T4bSS. We have now solved a crystal structure of IcmR-IcmQ to further our understanding of this complex. This structure revealed an amphipathic four-helix bundle, formed by IcmR and the N-terminal domain of IcmQ, which is linked to a novel C-terminal domain of IcmQ (Qc) by a linker helix. The Qc domain has structural homology with ADP ribosyltransferase domains in certain bacterial toxins and binds NAD(+) with a dissociation constant in the physiological range. Structural homology and molecular dynamics were used to identify an extended NAD(+) binding site on Qc, and the resulting model was tested by mutagenesis and binding assays. Based on the data, we suggest that IcmR-IcmQ binds to membranes, where it may interact with, or perhaps modify, a protein in the T4bSS when NAD(+) is bound.

Indexed as

Legionella pneumophilaAmino Acid SequenceBacterial ProteinsBacterial Secretion SystemsBinding SitesCrystallography, X-RayHydrogen BondingLipid BilayersModels, MolecularMolecular ChaperonesMolecular Sequence DataNADProtein BindingProtein Structure, SecondaryBacterial ProteinsBacterial Secretion SystemsICMQ protein, Legionella pneumophilaIcmR protein, Legionella pneumophilaLipid BilayersMolecular ChaperonesNAD

Identifiers

PMID23850453
PMCPMC3816012
OpenAlexW2078910116

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.