Evidence map›Paper›PMID 23849776›Full record

ArticleAmerican journal of human genetics2013

Detection of clinically relevant genetic variants in autism spectrum disorder by whole-genome sequencing.

Yong-hui Jiang, Ryan K C Yuen, Xin Jin, Mingbang Wang, Nong Chen, Xueli Wu, Jia Ju, Junpu Mei, Yujian Shi, Mingze He and 29 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 265 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
265citing papers in PubMed, 3 pooled it
29.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

265 citing papers in PubMed, 3 syntheses or guidelines pooled it, 495 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Guideline
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Distinct Synaptic Mechanisms DrivebioRxiv : the preprint server for biology · 2025
    Article
  14. Article
  15. Article
  16. Article
  17. [Expert consensus on auditory intervention and language rehabilitation of CHARGE syndrome].Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery · 2025
    Article
  18. Article
  19. Article
  20. Review

205 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors at 11 institutions in 5 countries.

Yong-hui JiangDepartment of Paediatrics and Neurobiology, Duke University School of Medicine, Durham, NC 27710, USA.
Ryan K C Yuen
Xin Jin
Mingbang Wang
Nong Chen
Xueli Wu
Jia Ju
Junpu Mei
Yujian Shi
Mingze He
Guangbiao Wang
Jieqin Liang
Zhe Wang
Dandan Cao
Melissa T Carter
Christina Chrysler
Irene E Drmic
Jennifer L Howe
Lynette Lau
Christian R Marshall
Daniele Merico
Thomas Nalpathamkalam
Bhooma Thiruvahindrapuram
Ann Thompson
Mohammed Uddin
Susan Walker
Jun Luo
Evdokia Anagnostou
Lonnie Zwaigenbaum
Robert H Ring
Jian Wang
Clara Lajonchere
Jun Wang
Andy Shih
Peter Szatmari
Huanming Yang
Geraldine Dawson
Yingrui Li
Stephen W Scherer
BGI Group (China) · CNHospital for Sick Children · CAAutism Speaks · USMcMaster University · CAUniversity of Toronto · CAAarhus University · DKChildren's Hospital of Philadelphia · USDuke University · USHolland Bloorview Kids Rehabilitation Hospital · CANational Supercomputing Center of Tianjin · CNUniversity of Alberta · CA

Funding

Center for Molecular &Cellular Studies of Ped DiseaseK12HD043494 · NICHD · DUKE UNIVERSITY · PI REED, ANN M. · 2003 to 2017
$5.2M
Analysis of Shank3 Complete and Temporal and Spatial Specific Knockout MiceR01MH098114 · NIMH · DUKE UNIVERSITY · PI JIANG, YONG-HUI · 2012 to 2016
$2.2M
CIHRNICHD NIH HHS K12 HD043494NIMH NIH HHS R01 MH098114NIMH NIH HHS R01MH098114-01
6 · The paper itself

Abstract

Autism Spectrum Disorder (ASD) demonstrates high heritability and familial clustering, yet the genetic causes remain only partially understood as a result of extensive clinical and genomic heterogeneity. Whole-genome sequencing (WGS) shows promise as a tool for identifying ASD risk genes as well as unreported mutations in known loci, but an assessment of its full utility in an ASD group has not been performed. We used WGS to examine 32 families with ASD to detect de novo or rare inherited genetic variants predicted to be deleterious (loss-of-function and damaging missense mutations). Among ASD probands, we identified deleterious de novo mutations in six of 32 (19%) families and X-linked or autosomal inherited alterations in ten of 32 (31%) families (some had combinations of mutations). The proportion of families identified with such putative mutations was larger than has been previously reported; this yield was in part due to the comprehensive and uniform coverage afforded by WGS. Deleterious variants were found in four unrecognized, nine known, and eight candidate ASD risk genes. Examples include CAPRIN1 and AFF2 (both linked to FMR1, which is involved in fragile X syndrome), VIP (involved in social-cognitive deficits), and other genes such as SCN2A and KCNQ2 (linked to epilepsy), NRXN1, and CHD7, which causes ASD-associated CHARGE syndrome. Taken together, these results suggest that WGS and thorough bioinformatic analyses for de novo and rare inherited mutations will improve the detection of genetic variants likely to be associated with ASD or its accompanying clinical symptoms.

Indexed as

Genetic Predisposition to DiseaseGenomeMutationAdultChildChild Development Disorders, PervasiveFemaleGenetic HeterogeneityHigh-Throughput Nucleotide SequencingHumansMalePedigree

Identifiers

PMID23849776
PMCPMC3738824
OpenAlexW2040026415

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.