ArticleInternational journal of biological sciences2013
Loop nucleotide polymorphism in a putative miRNA precursor associated with seed length in rice (Oryza sativa L.).
Article in International journal of biological sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed, 30 citations in OpenAlex.
- Beyond a simple oxidation reaction: the complex molecular network regulating fruit and vegetable browning.Horticulture research · 2026Article
- The importance of genotyping within the climate-smart plant breeding value chain - integrative tools for genetic enhancement programs.Frontiers in plant science · 2024Review
- Genome-wide association studies identify OsWRKY53 as a key regulator of salt tolerance in rice.Nature communications · 2023Article
- Identification of microRNAs That Provide a Low Light Stress Tolerance-Mediated Signaling Pathway during Vegetative Growth in Rice.Plants (Basel, Switzerland) · 2022Article
- Selection and Validation of 48 KASP Markers for Variety Identification and Breeding Guidance in Conventional and Hybrid Rice (Oryza sativa L.).Rice (New York, N.Y.) · 2022Article
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- Prevention of Enzymatic Browning by Natural Extracts and Genome-Editing: A Review on Recent Progress.Molecules (Basel, Switzerland) · 2022Review
- Regulatory non-coding RNAs: a new frontier in regulation of plant biology.Functional & integrative genomics · 2021Review
- Review
- Genome-wide associated study identifies NAC42-activated nitrate transporter conferring high nitrogen use efficiency in rice.Nature communications · 2019Article
- Development of species specific putative miRNA and its target prediction tool in wheat (Triticum aestivum L.).Scientific reports · 2019Article
- miRNomes involved in imparting thermotolerance to crop plants.3 Biotech · 2018Review
- Identification of browning-related microRNAs and their targets reveals complex miRNA-mediated browning regulatory networks in Luffa cylindrica.Scientific reports · 2018Article
- Development of transcriptome based web genomic resources of yellow mosaic disease inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2017Article
- Article
- SNP-based analysis of genetic diversity reveals important alleles associated with seed size in rice.BMC plant biology · 2016Article
- Evolutionarily Dynamic, but Robust, Targeting of Resistance Genes by the miR482/2118 Gene Family in the Solanaceae.Genome biology and evolution · 2015Article
- Evolutionary Comparison of Two Combinatorial Regulators of SBP-Box Genes, MiR156 and MiR529, in Plants.PloS one · 2015Article
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Authors and funding
7 authors at 4 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The terminal loop region of primary miRNA transcripts is an important determinant controlling miRNA function in human, animals and plants. However, the effects of polymorphisms in loop region of miRNA precusors on phenotypic variation have not been reported, especially on agronomic traits in rice. From rice japonica variety Koshihikari and indica Guichao2, we isolated a precursor of putative miRNA osa-MIR2923a. We detected a GG/AA polymorphism in the loop structure from japonica and indica rice varieties, which was corresponding to japonica/indica rice differentiation. By using high-resolution melting (HRM) analysis, we measured the polymorphisms in a RIL (recombinant inbred lines) population derived from japonica variety Koshihikari and indica Guichao2. We found that the GG/AA polymorphism in the osa-MIR2923a loop was correlated to grain length and length-width ratio. We further found the significant association between seed length and GG/AA polymorphism in a population consisting of 72 rice landraces. Three targets were predicted, whose expressions showed significant differences between the two varieties. Our results suggested that the putative miRNA precursor and the three target genes could play functional roles for indica/japonica seed differentiation.
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