Evidence map›Paper›PMID 23846702›Full record

ArticleThe Journal of biological chemistry2013

Bpur, the Lyme disease spirochete's PUR domain protein: identification as a transcriptional modulator and characterization of nucleic acid interactions.

Brandon L Jutras, Alicia M Chenail, Dustin W Carroll, M Clarke Miller, Haining Zhu, Amy Bowman, Brian Stevenson

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Virulence Regulation inMicroorganisms · 2025
    Review
  3. Article
  4. Article
  5. bioRxiv : the preprint server for biology · 2024
    Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Gene Regulation and Transcriptomics.Current issues in molecular biology · 2021
    Article
  12. Article
  13. Article
  14. Transcript decay mediated by RNase III in Borrelia burgdorferi.Biochemical and biophysical research communications · 2020
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Small RNAs ofThe Yale journal of biology and medicine · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Brandon L JutrasFrom the Department of Microbiology, Immunology, and Molecular Genetics and.
Alicia M ChenailFrom the Department of Microbiology, Immunology, and Molecular Genetics and.
Dustin W Carrollthe Graduate Center for Toxicology, University of Kentucky College of Medicine, Lexington, Kentucky 40536.
M Clarke Millerthe James Graham Brown Cancer Center, University of Louisville, Louisville, Kentucky 40202, and.
Haining Zhuthe Department of Molecular and Cellular Biochemistry, University of Kentucky College of Medicine, Lexington, Kentucky 40536.
Amy BowmanFrom the Department of Microbiology, Immunology, and Molecular Genetics and.
Brian StevensonFrom the Department of Microbiology, Immunology, and Molecular Genetics and. Electronic address: brian.stevenson@uky.edu.
Laboratory of Molecular Genetics · PLUniversity of Kentucky · USUniversity of Louisville · US

Funding

ANALYSIS OF BORRELIA BURGDORFERI ERP PROTEINSR01AI044254 · NIAID · UNIVERSITY OF KENTUCKY · PI STEVENSON, BRIAN · 2000 to 2010
$3.1M
Borrelia burdorferi Ebfc regulonR21AI106260 · NIAID · UNIVERSITY OF KENTUCKY · PI STEVENSON, BRIAN · 2013 to 2014
$343k
NIAID NIH HHS R01 AI044254NIAID NIH HHS R01-AI044254NIAID NIH HHS R21 AI106260NIAID NIH HHS R21-AI106260
6 · The paper itself

Abstract

The PUR domain is a nucleic acid-binding motif found in critical regulatory proteins of higher eukaryotes and in certain species of bacteria. During investigations into mechanisms by which the Lyme disease spirochete controls synthesis of its Erp surface proteins, it was discovered that the borrelial PUR domain protein, Bpur, binds with high affinity to double-stranded DNA adjacent to the erp transcriptional promoter. Bpur was found to enhance the effects of the erp repressor protein, BpaB. Bpur also bound single-stranded DNA and RNA, with relative affinities RNA > double-stranded DNA > single-stranded DNA. Rational site-directed mutagenesis of Bpur identified amino acid residues and domains critical for interactions with nucleic acids, and it revealed that the PUR domain has a distinct mechanism of interaction with each type of nucleic acid ligand. These data shed light on both gene regulation in the Lyme spirochete and functional mechanisms of the widely distributed PUR domain.

Indexed as

Bacterial ProteinsBorrelia burgdorferiDNA, BacterialDNA-Binding ProteinsDNA, Single-StrandedHumansLyme DiseaseMembrane ProteinsProtein Structure, TertiaryRNA, BacterialRNA-Binding ProteinsBacterial ProteinsDNA, BacterialDNA-Binding ProteinsDNA, Single-StrandedMembrane ProteinsRNA, BacterialRNA-Binding ProteinsBacteriaBorrelia burgdorferiDNA-binding ProteinerpGene RegulationPUR DomainRNA-binding ProteinTranscription Regulation

Identifiers

PMID23846702
PMCPMC3764826
OpenAlexW2090782442

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.