Evidence map›Paper›PMID 23844124›Full record

ArticlePloS one2013

Gene-metabolite expression in blood can discriminate allergen-induced isolated early from dual asthmatic responses.

Amrit Singh, Masatsugu Yamamoto, Sarah H Y Kam, Jian Ruan, Gail M Gauvreau, Paul M O'Byrne, J Mark FitzGerald, Robert Schellenberg, Louis-Philippe Boulet, Gabriella Wojewodka and 4 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01113697 (Molecular Mechanisms Involved in the Early and Late Responses to Allergen Challenge, in Asthmatic and Allergic Rhinitis Cohorts), which is not on this map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01113697 completednot on this map

Molecular Mechanisms Involved in the Early and Late Responses to Allergen Challenge, in Asthmatic and Allergic Rhinitis Cohorts

TypeobservationalSponsorUniversity of British ColumbiaRan2009 to 2023Enrolled520ConditionsAsthma, Allergic Rhinitis
3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Neutrophil phenotypes in bronchial airways differentiate single from dual responding allergic asthmatics.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2023
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  12. Th17/Treg ratio derived using DNA methylation analysis is associated with the late phase asthmatic response.Allergy, asthma, and clinical immunology : official journal of the Canadian Society of Allergy and Clinical Immunology · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Amrit SinghJames Hogg Research Centre, St Paul's Hospital, University of British Columbia, Vancouver, British Columbia, Canada.
Masatsugu Yamamoto
Sarah H Y Kam
Jian Ruan
Gail M Gauvreau
Paul M O'Byrne
J Mark FitzGerald
Robert Schellenberg
Louis-Philippe Boulet
Gabriella Wojewodka
Cynthia Kanagaratham
Juan B De Sanctis
Danuta Radzioch
Scott J Tebbutt
University of British Columbia · CAMcGill University · CASt. Paul's Hospital · CAMcMaster University · CACentral University of Venezuela · VEUniversité Laval · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Some asthmatic individuals undergoing allergen inhalation challenge develop an isolated early response whereas others develop a dual response (early plus late response). In the present study we have used transcriptomics (microarrays) and metabolomics (mass spectrometry) of peripheral blood to identify molecular patterns that can discriminate allergen-induced isolated early from dual asthmatic responses. Peripheral blood was obtained prior to (pre-) and 2 hours post allergen inhalation challenge from 33 study participants. In an initial cohort of 14 participants, complete blood counts indicated significant differences in neutrophil and lymphocyte counts at pre-challenge between early and dual responders. At post-challenge, significant genes (ALOX15, FADS2 and LPCAT2) and metabolites (lysolipids) were enriched in lipid metabolism pathways. Enzymes encoding for these genes are involved in membrane biogenesis and metabolism of fatty acids into pro-inflammatory and anti-inflammatory mediators. Correlation analysis indicated a strong negative correlation between ALOX15, FADS2, and IL5RA expression with 2-arachidonoylglycerophosphocholine levels in dual responders. However, measuring arachidonic acid and docosahexaenoic acid levels in a validation cohort of 19 participants indicated that the free form of DHA (nmoles/µg of protein) was significantly (p = 0.03) different between early and dual responders after allergen challenge. Collectively these results may suggest an imbalance in lipid metabolism which dictates pro- (anti-) inflammatory and pro-resolving mechanisms. Future studies with larger sample sizes may reveal novel mechanisms and therapeutic targets of the late phase asthmatic response.

Indexed as

Allergens1-Acylglycerophosphocholine O-AcyltransferaseAdultArachidonate 15-LipoxygenaseArachidonic AcidAsthmaBlood Cell CountBronchial Provocation TestsCohort StudiesDiagnosis, DifferentialDocosahexaenoic AcidsFatty Acid DesaturasesFemaleGene Expression ProfilingHumansLysophosphatidylcholines1-Acylglycerophosphocholine O-Acyltransferase2-arachidonoyllysophosphatidylcholineAllergensALOX15 protein, humanArachidonate 15-LipoxygenaseArachidonic AcidDocosahexaenoic AcidsFADS2 protein, humanFatty Acid DesaturasesLPCAT2 protein, humanLysophosphatidylcholines

Identifiers

PMID23844124
PMCPMC3699462
OpenAlexW2046614790

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.