Evidence map›Paper›PMID 23844046›Full record

SynthesisPloS one2013

Are C-reactive protein associated genetic variants associated with serum levels and retinal markers of microvascular pathology in Asian populations from Singapore?

Rajkumar Dorajoo, Ruoying Li, Mohammad Kamran Ikram, Jianjun Liu, Philippe Froguel, Jeannette Lee, Xueling Sim, Rick Twee-Hee Ong, Wan Ting Tay, Chen Peng and 18 more

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 3 pooled it
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 3 syntheses or guidelines pooled it, 48 citations in OpenAlex.

  1. Pooled it
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  8. A decade in psychiatric GWAS research.Molecular psychiatry · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 19 institutions in 8 countries.

Rajkumar DorajooGenome Institute of Singapore, Agency for Science, Technology and Research, Singapore, Singapore.
Ruoying Li
Mohammad Kamran Ikram
Jianjun Liu
Philippe Froguel
Jeannette Lee
Xueling Sim
Rick Twee-Hee Ong
Wan Ting Tay
Chen Peng
Terri L Young
Alexandra I F Blakemore
Ching Yu Cheng
Tin Aung
Paul Mitchell
Jie Jin Wang
Caroline C Klaver
Eric Boerwinkle
Ronald Klein
David S Siscovick
Richard A Jensen
Vilmundur Gudnason
Albert Vernon Smith
Yik Ying Teo
Tien Yin Wong
E-Shyong Tai
Chew-Kiat Heng
Yechiel Friedlander
National University of Singapore · SGNational University Health System · SGSingapore National Eye Center · SGUniversity of Washington · USAgency for Science, Technology and Research · SGBaylor College of Medicine · USCentre for Eye Research Australia · AUDuke-NUS Medical School · SGErasmus MC · NLGenome Institute of Singapore · SGHammersmith Hospital · GBHebrew University of Jerusalem · ILIcelandic Heart Association · ISImperial College London · GBMichigan United · USSingapore Eye Research Institute · SGUniversity of Iceland · ISUniversity of Sydney · AUUniversity of Wisconsin–Madison · US

Funding

Medical Research Council G1002084
6 · The paper itself

Abstract

introductionC-reactive protein (CRP) levels are associated with cardiovascular disease and systemic inflammation. We assessed whether CRP-associated loci were associated with serum CRP and retinal markers of microvascular disease, in Asian populations.

methodsGenome-wide association analysis (GWAS) for serum CRP was performed in East-Asian Chinese (N = 2,434) and Malays (N = 2,542) and South-Asian Indians (N = 2,538) from Singapore. Leveraging on GWAS data, we assessed, in silico, association levels among the Singaporean datasets for 22 recently identified CRP-associated loci. At loci where directional inconsistencies were observed, quantification of inter-ethnic linkage disequilibrium (LD) difference was determined. Next, we assessed association for a variant at CRP and retinal vessel traits [central retinal artery equivalent (CRAE) and central retinal vein equivalent (CRVE)] in a total of 24,132 subjects of East-Asian, South-Asian and European ancestry.

resultsSerum CRP was associated with SNPs in/near APOE, CRP, HNF1A and LEPR (p-values ≤4.7×10(-8)) after meta-analysis of Singaporean populations. Using a candidate-SNP approach, we further replicated SNPs at 4 additional loci that had been recently identified to be associated with serum CRP (IL6R, GCKR, IL6 and IL1F10) (p-values ≤0.009), in the Singaporean datasets. SNPs from these 8 loci explained 4.05% of variance in serum CRP. Two SNPs (rs2847281 and rs6901250) were detected to be significant (p-value ≤0.036) but with opposite effect directions in the Singaporean populations as compared to original European studies. At these loci we did not detect significant inter-population LD differences. We further did not observe a significant association between CRP variant and CRVE or CRAE levels after meta-analysis of all Singaporean and European datasets (p-value >0.058).

conclusionsCommon variants associated with serum CRP, first detected in primarily European studies, are also associated with CRP levels in East-Asian and South-Asian populations. We did not find a causal link between CRP and retinal measures of microvascular disease.

Indexed as

Asian PeopleGenome-Wide Association StudyAdultApolipoproteins EC-Reactive ProteinCytokinesFemaleGenetic LociHepatocyte Nuclear Factor 1-alphaHumansLinkage DisequilibriumMaleMicrovesselsMiddle AgedPolymorphism, Single NucleotideReceptors, LeptinApolipoproteins EC-Reactive ProteinCytokinesHepatocyte Nuclear Factor 1-alphaHNF1A protein, humanReceptors, Leptin

Identifiers

PMID23844046
PMCPMC3699653
OpenAlexW2154894981

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.