Evidence map›Paper›PMID 23843967›Full record

ArticlePloS one2013

Unravelling the complexity of human olfactory receptor repertoire by copy number analysis across population using high resolution arrays.

Avinash M Veerappa, Sangeetha Vishweswaraiah, Kusuma Lingaiah, Megha Murthy, Dinesh S Manjegowda, Radhika Nayaka, Nallur B Ramachandra

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Avinash M VeerappaGenomics Lab, Department of Studies in Zoology, University of Mysore, Manasagangotri, Mysore, India.
Sangeetha Vishweswaraiah
Kusuma Lingaiah
Megha Murthy
Dinesh S Manjegowda
Radhika Nayaka
Nallur B Ramachandra
University of Mysore · INYenepoya University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Olfactory receptors (OR), responsible for detection of odor molecules, belong to the largest family of genes and are highly polymorphic in nature having distinct polymorphisms associated with specific regions around the globe. Since there are no reports on the presence of copy number variations in OR repertoire of Indian population, the present investigation in 43 Indians along with 270 HapMap and 31 Tibetan samples was undertaken to study genome variability and evolution. Analysis was performed using Affymetrix Genome-Wide Human SNP Array 6.0 chip, Affymterix CytoScan(®) High-Density array, HD-CNV, and MAFFT program. We observed a total of 1527 OR genes in 503 CNV events from 81.3% of the study group, which includes 67.6% duplications and 32.4% deletions encompassing more of genes than pseudogenes. We report human genotypic variation in functional OR repertoire size across populations and it was found that the combinatorial effect of both "orthologous obtained from closely related species" and "paralogous derived sequences" provide the complexity to the continuously occurring OR CNVs.

Indexed as

Gene DosageOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotideAdolescentAdultAgedChromosome MappingCluster AnalysisComputational BiologyDNA Copy Number VariationsGene Regulatory NetworksGenome-Wide Association StudyHumansMiddle AgedOlfactory Receptor NeuronsPhylogenyReceptors, Odorant

Identifiers

PMID23843967
PMCPMC3700933
OpenAlexW1988780263

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.